Factsheet for HORVU0Hr1G035310.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G011250.1	Barley	cytosol	47.08	92.88
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.07	82.94
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.24	80.81
HORVU0Hr1G031920.1	Barley	plastid	100.0	67.67
HORVU1Hr1G010970.1	Barley	mitochondrion	91.41	64.41
HORVU1Hr1G010890.5	Barley	cytosol	94.5	61.25
HORVU1Hr1G011160.2	Barley	cytosol, plastid	93.13	60.56
HORVU1Hr1G011300.3	Barley	plastid	95.19	60.22
HORVU1Hr1G011150.1	Barley	cytosol, plastid	89.35	58.89
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	62.37	51.93
KXG35774	Sorghum	cytosol, mitochondrion	41.75	51.37
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	70.79	49.64
HORVU1Hr1G014040.1	Barley	mitochondrion	69.24	48.38
HORVU1Hr1G013810.1	Barley	plastid	69.42	48.15
HORVU6Hr1G076780.7	Barley	mitochondrion	67.18	47.45
HORVU1Hr1G004750.6	Barley	plastid	62.37	45.49
HORVU1Hr1G014060.1	Barley	plastid	67.53	44.16
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	54.98	41.78
Zm00001d007534_P001	Maize	plastid	53.78	40.28
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	32.13	38.96
Zm00001d007548_P001	Maize	plastid	54.3	38.82
Os04t0351333-00	Rice	cytosol	58.59	38.79
KXG28799	Sorghum	plastid	50.52	38.68
Zm00001d007559_P001	Maize	plastid	54.3	38.68
Zm00001d007555_P001	Maize	plastid	53.95	38.57
Zm00001d007531_P001	Maize	plastid	53.61	38.33
HORVU1Hr1G018190.2	Barley	cytosol	18.73	38.25
HORVU1Hr1G011400.44	Barley	plastid	40.38	38.15
HORVU6Hr1G017870.2	Barley	mitochondrion	19.24	37.33
PGSC0003DMT400052977	Potato	cytosol	20.96	31.36
HORVU6Hr1G014310.1	Barley	mitochondrion	36.77	31.15
HORVU6Hr1G002890.6	Barley	cytosol, plastid	42.44	31.07
Solyc06g007280.2.1	Tomato	cytosol	13.23	30.2
CDX68679	Canola	cytosol	5.67	28.7
PGSC0003DMT400008759	Potato	cytosol	15.64	28.53
Bra027636.1-P	Field mustard	cytosol	15.81	28.4
KRH09082	Soybean	cytosol	19.76	28.19
Solyc06g005220.2.1	Tomato	cytosol	19.59	28.08
Bra026884.1-P	Field mustard	cytosol	21.99	27.89
Solyc06g007810.1.1	Tomato	cytosol	12.71	27.61
Bra027029.1-P	Field mustard	mitochondrion	11.51	27.57
KRH39054	Soybean	cytosol	23.02	26.96
KRH39004	Soybean	cytosol	22.68	26.56
KRH39112	Soybean	cytosol	22.68	26.56
VIT_14s0081g00110.t01	Wine grape	cytosol	22.16	26.27
KRH39072	Soybean	cytosol	22.16	26.01
KRH39057	Soybean	cytosol	22.16	25.96
KRH39074	Soybean	cytosol	22.16	25.96
Bra006187.1-P	Field mustard	plastid	12.71	25.43
Os04t0349600-01	Rice	plastid	16.84	25.32
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.79	23.96
KRH39066	Soybean	cytosol	22.68	23.78
KRH08636	Soybean	cytosol	21.13	23.56
Bra036649.1-P	Field mustard	cytosol	15.81	23.53
PGSC0003DMT400025067	Potato	cytosol	19.07	23.32
KRH09084	Soybean	plastid	20.45	23.29
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.76	23.23
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.9	23.06
KRH25652	Soybean	cytosol, golgi	20.96	22.59
KRH40513	Soybean	plastid	13.57	22.51
KRH09121	Soybean	mitochondrion	20.62	22.47
AT5G16640.1	Thale cress	mitochondrion	19.42	22.42
KRH17148	Soybean	mitochondrion	20.96	22.39
KRH48615	Soybean	mitochondrion	20.79	22.2
KRH09154	Soybean	mitochondrion	21.13	22.12
KRH08607	Soybean	cytosol	21.31	22.1
PGSC0003DMT400025074	Potato	cytosol	20.96	22.1
PGSC0003DMT400008757	Potato	cytosol	18.9	22.09
VIT_14s0081g00120.t01	Wine grape	plastid	21.99	21.96
Bra026882.1-P	Field mustard	cytosol	20.1	21.91
KRH08671	Soybean	cytosol, mitochondrion	20.79	21.88
Bra031731.1-P	Field mustard	mitochondrion	19.07	21.85
KRH08639	Soybean	mitochondrion, plastid	21.13	21.77
Solyc06g007300.1.1	Tomato	extracellular	21.99	21.62
KRH08628	Soybean	plastid	20.45	21.56
KRH08277	Soybean	plastid	20.96	21.52
AT1G63330.2	Thale cress	cytosol	20.45	21.29
KRH41817	Soybean	mitochondrion	20.27	21.26
VIT_14s0030g02260.t01	Wine grape	cytosol	16.15	21.22
KRH08625	Soybean	plastid	20.96	21.18
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.35	21.17
AT3G16710.1	Thale cress	mitochondrion	18.38	21.1
PGSC0003DMT400052971	Potato	mitochondrion	21.48	21.08
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.9	20.95
Solyc06g007740.1.1	Tomato	cytosol	21.13	20.85
KRH40400	Soybean	plastid	20.45	20.62
VIT_14s0081g00270.t01	Wine grape	plastid	20.45	20.52
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.65	20.36
PGSC0003DMT400008760	Potato	mitochondrion	20.45	20.31
PGSC0003DMT400053185	Potato	mitochondrion	20.45	20.17
PGSC0003DMT400056663	Potato	plastid	20.27	20.07
PGSC0003DMT400056665	Potato	mitochondrion	20.27	20.03
Bra021192.1-P	Field mustard	plastid	17.18	19.84
AT1G62720.1	Thale cress	mitochondrion	16.49	19.79
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.65	19.72
KRH31646	Soybean	cytosol	17.53	19.69
AT1G12300.1	Thale cress	mitochondrion	21.48	19.62
KRH39050	Soybean	mitochondrion	17.87	19.55
AT1G62680.2	Thale cress	plastid	18.38	19.53
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.79	19.48
VIT_14s0030g02280.t01	Wine grape	plastid	18.73	19.43
AT5G41170.1	Thale cress	mitochondrion	17.53	19.35
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.32	19.35
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.04	19.34
AT1G64583.1	Thale cress	mitochondrion	17.01	19.34
Bra027026.1-P	Field mustard	mitochondrion	17.35	19.31
Bra016762.1-P	Field mustard	mitochondrion	20.1	19.28
AT1G12700.2	Thale cress	cytosol	20.45	19.26
KRH09097	Soybean	plastid	19.24	19.21
AT1G63130.1	Thale cress	mitochondrion	20.79	19.21
Bra028267.1-P	Field mustard	mitochondrion	20.62	19.17
AT1G62590.1	Thale cress	mitochondrion	20.79	19.09
Bra026954.1-P	Field mustard	mitochondrion	21.31	19.08
Bra026957.1-P	Field mustard	mitochondrion	19.76	19.07
Bra036651.1-P	Field mustard	mitochondrion	17.53	19.07
KRH09095	Soybean	plastid	19.07	18.97
AT1G62930.1	Thale cress	plastid	20.45	18.92
Bra026971.1-P	Field mustard	mitochondrion	20.45	18.92
Bra026958.1-P	Field mustard	mitochondrion	20.62	18.84
AT1G62910.1	Thale cress	mitochondrion	20.45	18.83
AT1G63070.1	Thale cress	mitochondrion	19.07	18.81
AT1G62670.1	Thale cress	mitochondrion	20.1	18.57
AT1G64580.1	Thale cress	mitochondrion	16.67	18.55
PGSC0003DMT400053182	Potato	cytosol	19.07	18.53
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.45	18.48
AT1G63150.1	Thale cress	mitochondrion	19.93	18.44
AT1G63080.3	Thale cress	mitochondrion	19.42	18.4
AT1G06580.1	Thale cress	mitochondrion	15.64	18.2
Solyc04g080120.1.1	Tomato	extracellular	19.07	18.14
KRH08599	Soybean	cytosol, plastid	20.79	18.09
PGSC0003DMT400015293	Potato	mitochondrion	18.73	17.87
PGSC0003DMT400015298	Potato	mitochondrion	18.73	17.87
Bra026401.1-P	Field mustard	plastid	16.32	17.76
PGSC0003DMT400053556	Potato	mitochondrion	13.4	16.99
AT1G63400.1	Thale cress	cytosol, plastid	16.84	16.98
KRH09085	Soybean	mitochondrion	20.1	16.62
AT4G26800.2	Thale cress	mitochondrion, plastid	14.43	16.34
AT1G62914.1	Thale cress	mitochondrion	14.6	16.1
KRH12873	Soybean	cytosol	19.24	16.09
AT1G64100.2	Thale cress	cytosol	21.99	15.88
Bra027656.1-P	Field mustard	cytosol	24.05	14.88
Bra027726.1-P	Field mustard	mitochondrion	12.03	14.86
KRH39064	Soybean	cytosol	23.37	14.04
Bra016758.1-P	Field mustard	plastid	21.13	10.61

Protein Annotations

EnsemblPlants:HORVU0Hr1G035310.1	EnsemblPlantsGene:HORVU0Hr1G035310	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	TIGRFAMs:TIGR00756
UniParc:UPI000B47F420	UniProt:A0A287EBK8	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:210337967..210339961

Molecular Weight (calculated)

64307.0 Da

IEP (calculated)

8.815

GRAVY (calculated)

0.018

Length

582 amino acids

Sequence
(BLAST)

001: GETGKACSLF HEMTRQGVKP SVVTYNSIID ALCKARAMDK AELVLRQMTT NGAQPDTVTY NCMIHGYATL GRLKEAAKMF RKMKSRGLIP DIVTCNSLMA
101: SLCKHGRSKE AAEIFDSMTA KGHKPDIISY CTLLHGYASE GCFADMIGLF NSMKSNGIAA NCHVFTILIH AYAKRGMVDD AMLIFTEMQQ QGVSPDVVTY
201: STVISTFSRM GRLTDAMEKF NQMVARGIQP NTAIYSSIIQ GFCMHGGLVK AKELVSEMIN KGIPRPDIVF FNSVINSLCK DGRVMDAHDI FDLVTDIGER
301: PDVITFNSLI DGYCLVGKMD KAFKILDAME VVGVEPNIVT YSTLVDGYCK NRRIDDGLTL FREMQRKGVK PNTITYGIML AGLFRAGRTV AARKKFHEMI
401: ESGTTVTVFT YGIILGGLCR NNCADEAIIL FQKLGTMNVK FSITILNTMI NAMYKVQRKE EAKELFATIS ASGLLPNEST YGVMIINLLK DGAVEDANNM
501: FSSMEKSGIV PGSRLLNRII RMLLEKGEIA KAGNYLSKVD GKRILLEAST TSLMLSLFSR KGKYHEDMKL LPAKYNFFDG CS

Best Arabidopsis Sequence Match ( AT1G63130.1 )
(BLAST)

001: MRRLFAISST GNRFVHRSLL GKGKCGTAPP SFSHCSFWVR DFSGVRYDYR KISINRLNDL KLDDAVNLFG DMVKSRPFPS IVEFSKLLSA IAKMNKFDLV
101: ISLGEQMQNL GISHNLYTYS ILINCFCRRS QLSLALAVLA KMMKLGYEPD IVTLNSLLNG FCHGNRISDA VSLVGQMVEM GYQPDSFTFN TLIHGLFRHN
201: RASEAVALVD RMVVKGCQPD LVTYGIVVNG LCKRGDIDLA LSLLKKMEQG KIEPGVVIYN TIIDALCNYK NVNDALNLFT EMDNKGIRPN VVTYNSLIRC
301: LCNYGRWSDA SRLLSDMIER KINPNVVTFS ALIDAFVKEG KLVEAEKLYD EMIKRSIDPD IFTYSSLING FCMHDRLDEA KHMFELMISK DCFPNVVTYN
401: TLIKGFCKAK RVDEGMELFR EMSQRGLVGN TVTYTTLIHG FFQARECDNA QIVFKQMVSD GVLPDIMTYS ILLDGLCNNG KVETALVVFE YLQRSKMEPD
501: IYTYNIMIEG MCKAGKVEDG WDLFCSLSLK GVKPNVVTYT TMMSGFCRKG LKEEADALFR EMKEEGPLPD SGTYNTLIRA HLRDGDKAAS AELIREMRSC
601: RFVGDASTIG LVTNMLHDGR LDKSFLKMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63130, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.