Factsheet for HORVU6Hr1G017870.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G127200.1	Wheat	cytosol	69.67	60.76
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	74.33	58.99
TraesCS6D01G083300.1	Wheat	mitochondrion	78.67	52.91
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	72.0	49.88
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	79.67	49.38
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.67	48.15
TraesCS6B01G127500.1	Wheat	cytosol	78.0	47.76
TraesCS6D01G083400.1	Wheat	mitochondrion	78.0	47.46
TraesCS6D01G083100.1	Wheat	cytosol	76.0	46.53
HORVU1Hr1G018190.2	Barley	cytosol	38.0	40.0
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	58.33	36.46
HORVU1Hr1G011250.1	Barley	cytosol	33.0	33.56
Solyc06g007280.2.1	Tomato	cytosol	21.67	25.49
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	51.0	21.89
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.33	21.75
KXG28799	Sorghum	plastid	53.33	21.05
HORVU6Hr1G076780.7	Barley	mitochondrion	56.33	20.51
HORVU1Hr1G010970.1	Barley	mitochondrion	55.33	20.1
HORVU1Hr1G014040.1	Barley	mitochondrion	55.67	20.05
HORVU1Hr1G013810.1	Barley	plastid	56.0	20.02
HORVU6Hr1G014310.1	Barley	mitochondrion	45.67	19.94
HORVU0Hr1G031920.1	Barley	plastid	56.67	19.77
Zm00001d007531_P001	Maize	plastid	53.33	19.66
Zm00001d007548_P001	Maize	plastid	53.0	19.53
Zm00001d007559_P001	Maize	plastid	53.0	19.46
HORVU1Hr1G004750.6	Barley	plastid	51.67	19.42
Zm00001d007555_P001	Maize	plastid	52.33	19.29
HORVU0Hr1G035310.1	Barley	cytosol	37.33	19.24
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	53.0	19.16
HORVU1Hr1G011160.2	Barley	cytosol, plastid	56.67	18.99
HORVU1Hr1G010890.5	Barley	cytosol	56.0	18.71
HORVU1Hr1G011150.1	Barley	cytosol, plastid	55.0	18.69
HORVU1Hr1G011300.3	Barley	plastid	55.67	18.15
VIT_12s0028g02320.t01	Wine grape	mitochondrion	28.67	18.03
Zm00001d007534_P001	Maize	plastid	46.67	18.02
HORVU1Hr1G014060.1	Barley	plastid	52.0	17.53
KRH39054	Soybean	cytosol	28.33	17.1
KRH40513	Soybean	plastid	20.0	17.09
KRH09084	Soybean	plastid	29.0	17.03
KRH39004	Soybean	cytosol	28.0	16.9
Bra036649.1-P	Field mustard	cytosol	21.67	16.62
KRH39072	Soybean	cytosol	27.33	16.53
HORVU6Hr1G002890.6	Barley	cytosol, plastid	43.67	16.48
Bra027029.1-P	Field mustard	mitochondrion	13.33	16.46
KRH39057	Soybean	cytosol	27.0	16.3
KRH09082	Soybean	cytosol	22.0	16.18
KRH09121	Soybean	mitochondrion	28.67	16.1
KRH39074	Soybean	cytosol	26.67	16.1
Bra027636.1-P	Field mustard	cytosol	17.33	16.05
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	27.0	16.04
HORVU1Hr1G011400.44	Barley	plastid	32.67	15.91
AT1G62914.1	Thale cress	mitochondrion	27.33	15.53
Solyc06g005220.2.1	Tomato	cytosol	21.0	15.52
KRH39112	Soybean	cytosol	25.67	15.49
KRH08636	Soybean	cytosol	26.33	15.13
KRH39050	Soybean	mitochondrion	26.67	15.04
KRH09095	Soybean	plastid	29.0	14.87
KRH08607	Soybean	cytosol	27.67	14.79
VIT_14s0030g02280.t01	Wine grape	plastid	27.67	14.79
KRH08628	Soybean	plastid	27.0	14.67
AT1G63080.3	Thale cress	mitochondrion	30.0	14.66
KRH09097	Soybean	plastid	28.33	14.58
AT1G63400.1	Thale cress	cytosol, plastid	28.0	14.56
PGSC0003DMT400025087	Potato	endoplasmic reticulum	24.0	14.55
KRH08639	Soybean	mitochondrion, plastid	27.33	14.51
AT1G63330.2	Thale cress	cytosol	27.0	14.49
KRH39066	Soybean	cytosol	26.67	14.41
KRH41817	Soybean	mitochondrion	26.67	14.41
KRH17148	Soybean	mitochondrion	26.0	14.31
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	25.0	14.29
VIT_14s0081g00110.t01	Wine grape	cytosol	23.33	14.26
Bra026884.1-P	Field mustard	cytosol	21.67	14.16
AT1G62670.1	Thale cress	mitochondrion	29.67	14.13
KRH08277	Soybean	plastid	26.67	14.11
KRH31646	Soybean	cytosol	24.33	14.09
AT5G16640.1	Thale cress	mitochondrion	23.67	14.09
KRH25652	Soybean	cytosol, golgi	25.33	14.07
KRH08671	Soybean	cytosol, mitochondrion	25.67	13.92
VIT_14s0081g00120.t01	Wine grape	plastid	27.0	13.89
AT1G12620.1	Thale cress	cytosol, mitochondrion	28.67	13.85
Bra027658.1-P	Field mustard	cytosol, mitochondrion	25.0	13.81
KRH40400	Soybean	plastid	26.33	13.69
KRH09154	Soybean	mitochondrion	25.33	13.67
PGSC0003DMT400025067	Potato	cytosol	21.67	13.66
VIT_14s0081g00270.t01	Wine grape	plastid	26.33	13.62
PGSC0003DMT400025074	Potato	cytosol	25.0	13.59
KRH08625	Soybean	plastid	26.0	13.54
AT1G62930.1	Thale cress	plastid	28.33	13.51
Bra016762.1-P	Field mustard	mitochondrion	27.33	13.51
Bra026958.1-P	Field mustard	mitochondrion	28.67	13.5
Bra026882.1-P	Field mustard	cytosol	24.0	13.48
AT1G62910.1	Thale cress	mitochondrion	28.33	13.45
AT1G12700.2	Thale cress	cytosol	27.67	13.43
Bra028267.1-P	Field mustard	mitochondrion	28.0	13.42
AT1G63070.1	Thale cress	mitochondrion	26.33	13.39
Solyc06g007740.1.1	Tomato	cytosol	26.33	13.39
PGSC0003DMT400052977	Potato	cytosol	17.33	13.37
AT1G12300.1	Thale cress	mitochondrion	28.33	13.34
AT1G63130.1	Thale cress	mitochondrion	28.0	13.33
AT3G22470.1	Thale cress	cytosol, mitochondrion	27.33	13.25
AT1G12775.1	Thale cress	cytosol, mitochondrion	28.33	13.2
Bra026971.1-P	Field mustard	mitochondrion	27.67	13.2
Solyc06g007300.1.1	Tomato	extracellular	26.0	13.18
AT1G64583.1	Thale cress	mitochondrion	22.33	13.09
PGSC0003DMT400056665	Potato	mitochondrion	25.67	13.07
PGSC0003DMT400053185	Potato	mitochondrion	25.67	13.05
PGSC0003DMT400008757	Potato	cytosol	21.33	12.85
Bra027026.1-P	Field mustard	mitochondrion	22.33	12.81
AT1G62720.1	Thale cress	mitochondrion	20.67	12.78
AT1G62590.1	Thale cress	mitochondrion	27.0	12.78
Bra026957.1-P	Field mustard	mitochondrion	25.67	12.77
Bra021192.1-P	Field mustard	plastid	21.33	12.7
AT1G64580.1	Thale cress	mitochondrion	22.0	12.62
AT5G41170.1	Thale cress	mitochondrion	22.0	12.52
Bra036651.1-P	Field mustard	mitochondrion	22.33	12.52
PGSC0003DMT400052971	Potato	mitochondrion	24.67	12.48
KRH48615	Soybean	mitochondrion	22.67	12.48
PGSC0003DMT400056663	Potato	plastid	24.33	12.41
Bra031731.1-P	Field mustard	mitochondrion	21.0	12.4
AT1G63150.1	Thale cress	mitochondrion	26.0	12.4
Bra006187.1-P	Field mustard	plastid	12.0	12.37
KRH08599	Soybean	cytosol, plastid	27.33	12.26
AT3G16710.1	Thale cress	mitochondrion	20.67	12.23
PGSC0003DMT400053556	Potato	mitochondrion	18.67	12.2
Bra025516.1-P	Field mustard	cytosol, mitochondrion	19.33	12.16
VIT_14s0081g00280.t01	Wine grape	mitochondrion	25.67	12.05
Bra026954.1-P	Field mustard	mitochondrion	26.0	12.0
AT4G26800.2	Thale cress	mitochondrion, plastid	20.33	11.87
KXG35774	Sorghum	cytosol, mitochondrion	18.67	11.84
PGSC0003DMT400015293	Potato	mitochondrion	24.0	11.8
PGSC0003DMT400015298	Potato	mitochondrion	24.0	11.8
AT1G06580.1	Thale cress	mitochondrion	19.67	11.8
Solyc04g080120.1.1	Tomato	extracellular	23.67	11.6
PGSC0003DMT400053182	Potato	cytosol	23.0	11.52
Bra026401.1-P	Field mustard	plastid	20.33	11.4
AT1G62680.2	Thale cress	plastid	20.67	11.31
PGSC0003DMT400008760	Potato	mitochondrion	22.0	11.26
KRH09085	Soybean	mitochondrion	26.33	11.22
KRH12873	Soybean	cytosol	25.67	11.06
AT1G64100.2	Thale cress	cytosol	27.67	10.3
Bra027656.1-P	Field mustard	cytosol	29.0	9.25
PGSC0003DMT400008759	Potato	cytosol	9.67	9.09
KRH39064	Soybean	cytosol	28.0	8.67
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.0	8.55
Bra027726.1-P	Field mustard	mitochondrion	13.33	8.49
VIT_14s0030g02260.t01	Wine grape	cytosol	12.0	8.13
Bra016758.1-P	Field mustard	plastid	26.67	6.9
Solyc06g007810.1.1	Tomato	cytosol	5.0	5.6
CDX68679	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU6Hr1G017870.2	EnsemblPlantsGene:HORVU6Hr1G017870	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
UniParc:UPI000B473581	UniProt:A0A287TGT2	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:43355999..43365458

Molecular Weight (calculated)

33563.3 Da

IEP (calculated)

6.694

GRAVY (calculated)

0.129

Length

300 amino acids

Sequence
(BLAST)

001: MPPGPRACPA FFGRLLKTGI PTNIVTYSSL FKCLCDMKRT DEALDVLLHR MSDDLANVIS YSVILKSFCD NGRSQLALDL LQMMAKKGAD HSPGVVSYNL
101: VIDGLFKEGE VSKACDLFHE MIRQGVVPDE VTYSYIINAL CKAGAMDKAE LIVRQMVHNG VQPHNRIYNT LIHGYLTLGQ LKEAFRLLKV MRSQGVMPNV
201: VTCNSVMDYF CKNGRIKEAE EIFYSMTVND RKPSIVSYST MVHGYAIEGS LVDMIDLCEL MARDGVVPDL HCFCILISAY AKYGMMDVAM LFFEDMLKQG

Best Arabidopsis Sequence Match ( AT1G64583.1 )
(BLAST)

001: MRRLIVTGIA TSTAKGFRRV VNPNLLGGGA AARAFSDYRE KLRTGFLHSI RFEDAFALFF EMVHSQPLPS IVDFTRLLTA TANLRRYETV IYFSQKMELY
101: GISHDLYSFT ILIHCFCRCS RLSFALSVLG KMMKLGYEPS IVTFGSLLHG FCLVNRIGDA FSLVILMVKS GYEPNVVVYN TLIDGLCKNG ELNIALELLN
201: EMEKKGLGAD VVTYNTLLTG LCYSGRWSDA ARMLRDMMKR SINPDVVTFT ALIDVFVKQG NLDEAQELYK EMIQSSVDPN NVTYNSIING LCMHGRLYDA
301: KKTFDLMASK GCFPNVVTYN TLISGFCKFR MVDEGMKLFQ RMSCEGFNAD IFTYNTLIHG YCQVGKLRVA LDIFCWMVSR RVTPDIITHC ILLHGLCVNG
401: EIESALVKFD DMRESEKYIG IVAYNIMIHG LCKADKVEKA WELFCRLPVE GVKPDARTYT IMILGLCKNG PRREADELIR RMKEEGIICQ MNAEDDHLEE
501: HSSSNKEISL VS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g64583, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7R3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.