Factsheet for TraesCS6A01G099100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G127200.1	Wheat	cytosol	73.81	81.1
HORVU6Hr1G017870.2	Barley	mitochondrion	58.99	74.33
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	75.93	59.3
TraesCS1A01G067700.1	Wheat	extracellular	43.12	48.37
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	64.02	48.11
TraesCS1A01G073800.1	Wheat	mitochondrion	32.8	37.24
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	47.35	35.03
TraesCS6A01G015000.1	Wheat	mitochondrion	37.3	33.98
Solyc06g007280.2.1	Tomato	cytosol	19.58	29.02
TraesCS1A01G057300.1	Wheat	cytosol	53.97	28.41
TraesCS1A01G031600.1	Wheat	cytosol	48.94	27.95
TraesCS1A01G073600.1	Wheat	mitochondrion	28.84	27.81
TraesCS1A01G054800.1	Wheat	cytosol	42.59	27.66
TraesCS2A01G526200.1	Wheat	golgi	48.94	27.17
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	17.99	26.88
TraesCS1A01G067000.1	Wheat	mitochondrion	50.79	26.82
TraesCS2A01G531000.1	Wheat	golgi	48.15	26.8
TraesCS1A01G031700.1	Wheat	plastid	51.85	26.45
TraesCS1A01G074000.1	Wheat	mitochondrion	19.31	25.8
TraesCS1A01G054500.1	Wheat	mitochondrion	52.91	25.64
KXG28799	Sorghum	plastid	50.53	25.13
TraesCS1A01G067600.1	Wheat	mitochondrion	53.17	24.72
TraesCS1A01G066600.1	Wheat	mitochondrion	17.2	24.71
TraesCS1A01G054700.2	Wheat	mitochondrion	52.65	24.51
TraesCS1A01G067400.1	Wheat	mitochondrion	53.44	24.48
TraesCS2A01G530600.1	Wheat	cytosol	48.68	24.05
Zm00001d007531_P001	Maize	plastid	50.79	23.59
TraesCS1A01G055800.1	Wheat	mitochondrion	47.88	23.48
Zm00001d007548_P001	Maize	plastid	50.53	23.46
Bra027029.1-P	Field mustard	mitochondrion	15.08	23.46
Zm00001d007559_P001	Maize	plastid	50.53	23.38
TraesCS2A01G531100.1	Wheat	cytosol	35.19	23.37
Zm00001d007555_P001	Maize	plastid	50.26	23.34
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	43.92	23.25
TraesCS6A01G083000.1	Wheat	cytosol	28.04	23.25
KRH40513	Soybean	plastid	21.16	22.79
KRH39004	Soybean	cytosol	29.89	22.74
KRH39054	Soybean	cytosol	29.89	22.74
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	43.12	22.73
TraesCS6A01G311600.1	Wheat	mitochondrion	50.26	22.73
Bra027636.1-P	Field mustard	cytosol	19.31	22.53
Bra036649.1-P	Field mustard	cytosol	23.28	22.51
KRH39072	Soybean	cytosol	29.1	22.18
Zm00001d007534_P001	Maize	plastid	45.5	22.14
KRH39074	Soybean	cytosol	28.57	21.73
VIT_12s0028g02320.t01	Wine grape	mitochondrion	27.25	21.59
KRH39112	Soybean	cytosol	28.31	21.53
KRH08636	Soybean	cytosol	29.63	21.46
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	28.57	21.39
KRH39057	Soybean	cytosol	28.04	21.33
Bra026884.1-P	Field mustard	cytosol	25.13	20.7
KRH39050	Soybean	mitochondrion	28.84	20.49
KXG35774	Sorghum	cytosol, mitochondrion	25.13	20.08
KRH39066	Soybean	cytosol	29.37	20.0
Solyc06g005220.2.1	Tomato	cytosol	21.43	19.95
TraesCS1A01G055500.1	Wheat	mitochondrion	11.38	19.82
KRH31646	Soybean	cytosol	26.98	19.69
KRH17148	Soybean	mitochondrion	28.31	19.63
PGSC0003DMT400052977	Potato	cytosol	20.11	19.54
KRH08639	Soybean	mitochondrion, plastid	29.1	19.47
KRH09082	Soybean	cytosol	20.9	19.36
KRH48615	Soybean	mitochondrion	27.78	19.27
KRH08628	Soybean	plastid	28.04	19.2
VIT_14s0081g00110.t01	Wine grape	cytosol	24.87	19.14
KRH25652	Soybean	cytosol, golgi	27.25	19.07
KRH08607	Soybean	cytosol	28.31	19.07
KRH08277	Soybean	plastid	28.57	19.05
KRH09084	Soybean	plastid	25.66	18.98
PGSC0003DMT400025087	Potato	endoplasmic reticulum	24.6	18.79
AT1G62914.1	Thale cress	mitochondrion	26.19	18.75
KRH40400	Soybean	plastid	28.57	18.72
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	25.93	18.67
KRH08671	Soybean	cytosol, mitochondrion	27.25	18.63
AT1G63330.2	Thale cress	cytosol	27.51	18.6
AT3G22470.1	Thale cress	cytosol, mitochondrion	30.42	18.58
KRH08625	Soybean	plastid	28.31	18.58
Bra006187.1-P	Field mustard	plastid	14.29	18.56
KRH09121	Soybean	mitochondrion	26.19	18.54
PGSC0003DMT400025067	Potato	cytosol	23.28	18.49
KRH41817	Soybean	mitochondrion	26.98	18.38
VIT_14s0030g02280.t01	Wine grape	plastid	27.25	18.36
AT5G16640.1	Thale cress	mitochondrion	24.34	18.25
VIT_14s0081g00120.t01	Wine grape	plastid	28.04	18.18
PGSC0003DMT400008757	Potato	cytosol	23.81	18.07
AT3G16710.1	Thale cress	mitochondrion	24.07	17.95
AT1G63400.1	Thale cress	cytosol, plastid	27.25	17.85
Bra025516.1-P	Field mustard	cytosol, mitochondrion	22.49	17.82
Bra026882.1-P	Field mustard	cytosol	25.13	17.79
KRH09154	Soybean	mitochondrion	25.93	17.63
AT1G62720.1	Thale cress	mitochondrion	22.49	17.53
Solyc06g007740.1.1	Tomato	cytosol	27.25	17.46
VIT_14s0081g00270.t01	Wine grape	plastid	26.72	17.41
AT1G62670.1	Thale cress	mitochondrion	28.84	17.3
Bra021192.1-P	Field mustard	plastid	23.02	17.26
Bra028267.1-P	Field mustard	mitochondrion	28.57	17.25
Bra026957.1-P	Field mustard	mitochondrion	27.51	17.25
AT1G12620.1	Thale cress	cytosol, mitochondrion	28.31	17.23
AT1G64580.1	Thale cress	mitochondrion	23.81	17.21
Bra036651.1-P	Field mustard	mitochondrion	24.34	17.2
Bra026971.1-P	Field mustard	mitochondrion	28.57	17.17
AT1G12300.1	Thale cress	mitochondrion	28.84	17.11
PGSC0003DMT400025074	Potato	cytosol	24.87	17.03
Bra027026.1-P	Field mustard	mitochondrion	23.55	17.02
AT1G64583.1	Thale cress	mitochondrion	23.02	16.99
Bra027658.1-P	Field mustard	cytosol, mitochondrion	24.34	16.94
PGSC0003DMT400008759	Potato	cytosol	14.29	16.93
AT1G62930.1	Thale cress	plastid	28.04	16.85
AT1G63130.1	Thale cress	mitochondrion	28.04	16.83
Bra016762.1-P	Field mustard	mitochondrion	26.98	16.8
Bra026958.1-P	Field mustard	mitochondrion	28.31	16.8
AT1G63070.1	Thale cress	mitochondrion	26.19	16.78
PGSC0003DMT400053556	Potato	mitochondrion	20.37	16.78
AT1G12700.2	Thale cress	cytosol	27.25	16.67
KRH09097	Soybean	plastid	25.66	16.64
AT1G63080.3	Thale cress	mitochondrion	26.98	16.61
PGSC0003DMT400053185	Potato	mitochondrion	25.93	16.61
AT4G26800.2	Thale cress	mitochondrion, plastid	22.49	16.54
Bra031731.1-P	Field mustard	mitochondrion	22.22	16.54
AT5G41170.1	Thale cress	mitochondrion	23.02	16.51
PGSC0003DMT400056665	Potato	mitochondrion	25.66	16.47
Bra026954.1-P	Field mustard	mitochondrion	28.31	16.46
AT1G12775.1	Thale cress	cytosol, mitochondrion	28.04	16.46
AT1G06580.1	Thale cress	mitochondrion	21.69	16.4
Solyc06g007300.1.1	Tomato	extracellular	25.66	16.39
AT1G62910.1	Thale cress	mitochondrion	27.25	16.3
KRH09095	Soybean	plastid	25.13	16.24
AT1G63150.1	Thale cress	mitochondrion	26.98	16.22
PGSC0003DMT400052971	Potato	mitochondrion	25.4	16.19
PGSC0003DMT400056663	Potato	plastid	25.13	16.16
AT1G62590.1	Thale cress	mitochondrion	26.98	16.09
KRH08599	Soybean	cytosol, plastid	28.31	15.99
VIT_14s0081g00280.t01	Wine grape	mitochondrion	26.98	15.96
AT1G62680.2	Thale cress	plastid	22.75	15.69
PGSC0003DMT400008760	Potato	mitochondrion	24.07	15.53
TraesCS6A01G014600.1	Wheat	cytosol	16.14	15.44
Bra026401.1-P	Field mustard	plastid	21.69	15.33
PGSC0003DMT400015293	Potato	mitochondrion	23.55	14.59
PGSC0003DMT400015298	Potato	mitochondrion	23.55	14.59
PGSC0003DMT400053182	Potato	cytosol	23.02	14.52
Solyc04g080120.1.1	Tomato	extracellular	23.02	14.22
KRH12873	Soybean	cytosol	25.66	13.94
TraesCS1A01G073700.1	Wheat	cytosol	14.02	13.77
Bra027726.1-P	Field mustard	mitochondrion	16.67	13.38
KRH09085	Soybean	mitochondrion	24.87	13.35
Bra026836.1-P	Field mustard	cytosol, mitochondrion	17.2	13.24
Solyc06g007810.1.1	Tomato	cytosol	9.26	13.06
VIT_14s0030g02260.t01	Wine grape	cytosol	14.81	12.64
AT1G64100.2	Thale cress	cytosol	26.72	12.53
Bra027656.1-P	Field mustard	cytosol	29.37	11.8
KRH39064	Soybean	cytosol	29.37	11.46
Bra016758.1-P	Field mustard	plastid	29.63	9.66
TraesCS1A01G056000.1	Wheat	cytosol	7.94	7.46
TraesCS1A01G067800.1	Wheat	cytosol	5.56	5.61
TraesCS1A01G055600.1	Wheat	cytosol	1.59	1.85
CDX68679	Canola	cytosol	0.26	0.87

Protein Annotations

EnsemblPlants:TraesCS6A01G099100.1	EnsemblPlantsGene:TraesCS6A01G099100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:66373785..66374921

Molecular Weight (calculated)

42508.5 Da

IEP (calculated)

8.462

GRAVY (calculated)

0.047

Length

378 amino acids

Sequence
(BLAST)

001: MPPRSWPAFF GRLLKTGITK DVVTYSSLFK CLCDMKRTEE ALNVLLHKMP DDLPNVISYS VILKSFCDSG RSQLVLDLLR MMAEKGSGHS PSVVSYSMVI
101: DGFFKEGEIS KACDLFHEMI QHGVVPTVVT YNSIIDARCK ARAMDKAEVV LRSMVHNGVQ PDAVTYNCLI QGYSTLGQLK EVARLLKVMR SQGVLPDVVT
201: YNSLMTCLCK NGRLKEAVVF FYSMAVNGQK PDVISYSVLL HGYAKEGSLI DMIDLCERMA RDGVVPNLHC FNILISAYAK YGRMDVAMLF FEDMLKKGLN
301: PNEFIYLTVI SAFCKMGRMD DALEKFNEMI DRGVPLGIKI YICMIEGYLN HGDSVKAEEF ITKMKSRGIR HRPRKGNC

Best Arabidopsis Sequence Match ( AT1G12700.1 )
(BLAST)

001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
601: LS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.