Factsheet for TraesCS1A01G067800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G055600.1	Wheat	cytosol	60.7	69.85
TraesCS1A01G056000.1	Wheat	cytosol	69.25	64.43
TraesCS1A01G073700.1	Wheat	cytosol	58.56	56.88
TraesCS1A01G054800.1	Wheat	cytosol	61.23	39.35
TraesCS1A01G067000.1	Wheat	mitochondrion	74.33	38.83
TraesCS1A01G067600.1	Wheat	mitochondrion	82.89	38.13
HORVU1Hr1G014060.1	Barley	plastid	89.04	37.42
TraesCS1D01G069100.1	Wheat	mitochondrion	63.37	36.86
TraesCS2A01G531100.1	Wheat	cytosol	54.81	36.03
TraesCS1A01G067400.1	Wheat	mitochondrion	77.01	34.91
TraesCS6A01G014600.1	Wheat	cytosol	36.36	34.43
KXG35774	Sorghum	cytosol, mitochondrion	43.32	34.25
TraesCS1A01G031600.1	Wheat	cytosol	58.82	33.23
TraesCS1A01G057300.1	Wheat	cytosol	63.64	33.15
TraesCS1A01G055800.1	Wheat	mitochondrion	67.11	32.56
TraesCS6A01G311600.1	Wheat	mitochondrion	71.39	31.94
TraesCS1A01G073600.1	Wheat	mitochondrion	33.16	31.63
TraesCS1B01G086000.1	Wheat	plastid	57.49	31.34
TraesCS1A01G054500.1	Wheat	mitochondrion	65.24	31.28
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	59.89	31.24
TraesCS1A01G054700.2	Wheat	mitochondrion	65.24	30.05
TraesCS2A01G526200.1	Wheat	golgi	53.21	29.22
TraesCS2A01G531000.1	Wheat	golgi	52.14	28.72
Zm00001d007534_P001	Maize	plastid	55.35	26.64
Zm00001d007559_P001	Maize	plastid	56.42	25.83
Zm00001d007548_P001	Maize	plastid	55.88	25.68
Zm00001d007555_P001	Maize	plastid	55.88	25.68
TraesCS2A01G530600.1	Wheat	cytosol	52.41	25.62
Zm00001d007531_P001	Maize	plastid	55.08	25.31
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	50.8	24.8
Os04t0351333-00	Rice	cytosol	56.68	24.12
KXG28799	Sorghum	plastid	48.66	23.95
TraesCS1A01G031700.1	Wheat	plastid	47.06	23.75
CDX68679	Canola	cytosol	7.22	23.48
TraesCS6A01G083000.1	Wheat	cytosol	27.81	22.81
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	27.01	19.77
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	37.17	19.47
Solyc06g007810.1.1	Tomato	cytosol	13.1	18.28
PGSC0003DMT400008759	Potato	cytosol	13.37	15.67
VIT_14s0030g02260.t01	Wine grape	cytosol	15.24	12.87
Bra006187.1-P	Field mustard	plastid	9.89	12.71
VIT_14s0081g00110.t01	Wine grape	cytosol	15.51	11.81
PGSC0003DMT400052977	Potato	cytosol	11.76	11.31
Bra026882.1-P	Field mustard	cytosol	15.78	11.05
KRH39004	Soybean	cytosol	14.17	10.66
KRH39074	Soybean	cytosol	14.17	10.66
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	14.17	10.49
KRH39072	Soybean	cytosol	13.9	10.48
KRH39054	Soybean	cytosol	13.9	10.46
KRH39057	Soybean	cytosol	13.9	10.46
Bra026884.1-P	Field mustard	cytosol	12.83	10.46
Bra031731.1-P	Field mustard	mitochondrion	14.17	10.43
KRH25652	Soybean	cytosol, golgi	14.97	10.37
Bra027636.1-P	Field mustard	cytosol	8.82	10.19
KRH08636	Soybean	cytosol	14.17	10.15
KRH17148	Soybean	mitochondrion	14.71	10.09
KRH39112	Soybean	cytosol	13.37	10.06
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.1	9.98
PGSC0003DMT400008757	Potato	cytosol	13.1	9.84
AT1G63330.2	Thale cress	cytosol	14.71	9.84
KRH08639	Soybean	mitochondrion, plastid	14.71	9.73
VIT_14s0081g00120.t01	Wine grape	plastid	14.97	9.61
KRH08628	Soybean	plastid	14.17	9.6
KRH08625	Soybean	plastid	14.71	9.55
PGSC0003DMT400025087	Potato	endoplasmic reticulum	12.57	9.49
VIT_14s0081g00270.t01	Wine grape	plastid	14.71	9.48
PGSC0003DMT400025067	Potato	cytosol	12.03	9.45
KRH08671	Soybean	cytosol, mitochondrion	13.9	9.4
KRH08277	Soybean	plastid	14.17	9.35
KRH09082	Soybean	cytosol	10.16	9.31
KRH08607	Soybean	cytosol	13.9	9.27
Solyc06g005220.2.1	Tomato	cytosol	9.89	9.11
VIT_14s0081g00280.t01	Wine grape	mitochondrion	15.51	9.08
KRH48615	Soybean	mitochondrion	13.1	8.99
AT1G12700.2	Thale cress	cytosol	14.71	8.9
KRH40400	Soybean	plastid	13.64	8.84
AT1G12620.1	Thale cress	cytosol, mitochondrion	14.44	8.7
PGSC0003DMT400025074	Potato	cytosol	12.83	8.7
AT1G62590.1	Thale cress	mitochondrion	14.71	8.68
Bra027658.1-P	Field mustard	cytosol, mitochondrion	12.57	8.66
KRH39066	Soybean	cytosol	12.83	8.65
KRH09154	Soybean	mitochondrion	12.83	8.63
Bra025516.1-P	Field mustard	cytosol, mitochondrion	10.96	8.6
AT1G62930.1	Thale cress	plastid	14.44	8.59
Bra016762.1-P	Field mustard	mitochondrion	13.9	8.57
KRH31646	Soybean	cytosol	11.76	8.49
Bra027726.1-P	Field mustard	mitochondrion	10.7	8.49
Bra026958.1-P	Field mustard	mitochondrion	14.44	8.48
AT1G63070.1	Thale cress	mitochondrion	13.37	8.47
Bra026957.1-P	Field mustard	mitochondrion	13.64	8.46
VIT_12s0028g02320.t01	Wine grape	mitochondrion	10.7	8.39
PGSC0003DMT400056665	Potato	mitochondrion	13.1	8.32
Bra027029.1-P	Field mustard	mitochondrion	5.35	8.23
KRH09084	Soybean	plastid	11.23	8.22
PGSC0003DMT400008760	Potato	mitochondrion	12.83	8.19
Bra028267.1-P	Field mustard	mitochondrion	13.64	8.15
AT1G63150.1	Thale cress	mitochondrion	13.64	8.11
Bra026971.1-P	Field mustard	mitochondrion	13.64	8.11
AT1G63130.1	Thale cress	mitochondrion	13.64	8.1
KRH08599	Soybean	cytosol, plastid	14.44	8.07
Bra026954.1-P	Field mustard	mitochondrion	13.9	8.0
PGSC0003DMT400056663	Potato	plastid	12.57	7.99
Solyc06g007740.1.1	Tomato	cytosol	12.57	7.97
Solyc06g007300.1.1	Tomato	extracellular	12.57	7.94
KRH41817	Soybean	mitochondrion	11.76	7.93
AT1G12775.1	Thale cress	cytosol, mitochondrion	13.64	7.92
AT3G22470.1	Thale cress	cytosol, mitochondrion	13.1	7.92
AT1G62910.1	Thale cress	mitochondrion	13.37	7.91
Bra036651.1-P	Field mustard	mitochondrion	11.23	7.85
AT1G12300.1	Thale cress	mitochondrion	13.37	7.85
PGSC0003DMT400053182	Potato	cytosol	12.57	7.85
Solyc04g080120.1.1	Tomato	extracellular	12.83	7.84
AT1G64100.2	Thale cress	cytosol	16.84	7.82
PGSC0003DMT400053185	Potato	mitochondrion	12.3	7.8
AT3G16710.1	Thale cress	mitochondrion	10.43	7.69
AT1G62680.2	Thale cress	plastid	11.23	7.66
AT1G63080.3	Thale cress	mitochondrion	12.57	7.65
AT1G62670.1	Thale cress	mitochondrion	12.83	7.62
Bra021192.1-P	Field mustard	plastid	10.16	7.54
AT1G64580.1	Thale cress	mitochondrion	10.43	7.46
PGSC0003DMT400052971	Potato	mitochondrion	11.76	7.42
AT5G41170.1	Thale cress	mitochondrion	10.43	7.4
PGSC0003DMT400015293	Potato	mitochondrion	12.03	7.38
PGSC0003DMT400015298	Potato	mitochondrion	12.03	7.38
Bra027026.1-P	Field mustard	mitochondrion	10.16	7.27
Bra036649.1-P	Field mustard	cytosol	7.49	7.16
AT5G16640.1	Thale cress	mitochondrion	9.63	7.14
KRH09121	Soybean	mitochondrion	10.16	7.12
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	9.89	7.05
Bra027656.1-P	Field mustard	cytosol	17.38	6.91
AT1G64583.1	Thale cress	mitochondrion	9.36	6.84
VIT_14s0030g02280.t01	Wine grape	plastid	9.89	6.6
KRH39050	Soybean	mitochondrion	9.36	6.58
KRH09097	Soybean	plastid	10.16	6.52
KRH09095	Soybean	plastid	10.16	6.5
AT1G62720.1	Thale cress	mitochondrion	8.29	6.39
AT1G63400.1	Thale cress	cytosol, plastid	9.63	6.24
AT1G06580.1	Thale cress	mitochondrion	8.29	6.2
Bra026401.1-P	Field mustard	plastid	8.82	6.17
KRH39064	Soybean	cytosol	15.51	5.99
KRH09085	Soybean	mitochondrion	10.7	5.68
KRH12873	Soybean	cytosol	10.43	5.6
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	5.61	5.56
KRH40513	Soybean	plastid	5.08	5.41
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	6.95	5.37
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	7.22	5.37
AT4G26800.2	Thale cress	mitochondrion, plastid	7.22	5.25
PGSC0003DMT400053556	Potato	mitochondrion	6.42	5.23
Bra016758.1-P	Field mustard	plastid	13.37	4.31
AT1G62914.1	Thale cress	mitochondrion	5.88	4.17
Os04t0349600-01	Rice	plastid	3.21	3.1
TraesCS1A01G055500.1	Wheat	mitochondrion	1.07	1.84
TraesCS1A01G074000.1	Wheat	mitochondrion	0.8	1.06
TraesCS1A01G066600.1	Wheat	mitochondrion	0.27	0.38
TraesCS1A01G067700.1	Wheat	extracellular	0.27	0.3
TraesCS6A01G015000.1	Wheat	mitochondrion	0.27	0.24
Solyc06g007280.2.1	Tomato	cytosol	0.0	0.0
TraesCS1A01G073800.1	Wheat	mitochondrion	0.0	0.0
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1A01G067800.1	EnsemblPlantsGene:TraesCS1A01G067800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1A:+:49356130..49357254

Molecular Weight (calculated)

41050.0 Da

IEP (calculated)

6.368

GRAVY (calculated)

0.069

Length

374 amino acids

Sequence
(BLAST)

001: MGKLTDAMDK FSQMVVGTGV QPDTVVYHSL VQFLCTHGDL VKAKELISEM MNKSIARPNT ALFSSIMDSL CNEGRVIDAH HIFDLVIDIG EKPDISMFST
101: LIDGYCLVGE MDKACGVLDA MVSAGIEPNV ITYSTLVSRY CKRGRIDDGL ILFRQMLHKK VKPTTVTYET TLNGLFRAGR TADAKKIFDE MIESGIMASI
201: STYNIILGGL CRNNCADEAV VLFQKLRAMN VKFNITTLNT IINALYKVER REEANDLFAA LPVSGLVPNA STYGVMVQNL LKEGAVEEAD SMFSSMEKSG
301: CAPSSRLVND VIRTLLEKGE IVKAGKYMSK VDGKSISLEA STSSLLLSLF SGNGKYREQL QLLPAKYQFF DGIS

Best Arabidopsis Sequence Match ( AT1G12620.1 )
(BLAST)

001: MRGLIQTRLL ETGTLRTALF LSCYGRVFSS VSDGKGKVSY RERLRSGIVD IKEDDAVDLF QEMTRSRPRP RLIDFSRLFS VVARTKQYDL VLDLCKQMEL
101: KGIAHNLYTL SIMINCCCRC RKLSLAFSAM GKIIKLGYEP DTVTFSTLIN GLCLEGRVSE ALELVDRMVE MGHKPTLITL NALVNGLCLN GKVSDAVLLI
201: DRMVETGFQP NEVTYGPVLK VMCKSGQTAL AMELLRKMEE RKIKLDAVKY SIIIDGLCKD GSLDNAFNLF NEMEIKGFKA DIIIYTTLIR GFCYAGRWDD
301: GAKLLRDMIK RKITPDVVAF SALIDCFVKE GKLREAEELH KEMIQRGISP DTVTYTSLID GFCKENQLDK ANHMLDLMVS KGCGPNIRTF NILINGYCKA
401: NLIDDGLELF RKMSLRGVVA DTVTYNTLIQ GFCELGKLEV AKELFQEMVS RRVRPDIVSY KILLDGLCDN GEPEKALEIF EKIEKSKMEL DIGIYNIIIH
501: GMCNASKVDD AWDLFCSLPL KGVKPDVKTY NIMIGGLCKK GSLSEADLLF RKMEEDGHSP NGCTYNILIR AHLGEGDATK SAKLIEEIKR CGFSVDASTV
601: KMVVDMLSDG RLKKSFLDML S

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12620 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.