Factsheet for TraesCS1A01G073800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G074000.1	Wheat	mitochondrion	64.86	76.33
TraesCS1A01G055500.1	Wheat	mitochondrion	42.34	64.98
TraesCS1A01G066600.1	Wheat	mitochondrion	51.05	64.64
TraesCS1A01G067700.1	Wheat	extracellular	48.35	47.77
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	33.63	44.27
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	55.26	36.58
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	50.45	34.71
Os04t0349600-01	Rice	plastid	39.34	33.85
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	37.24	32.8
TraesCS6A01G015000.1	Wheat	mitochondrion	40.24	32.29
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	66.67	30.96
TraesCS1D01G076500.1	Wheat	mitochondrion	60.96	30.57
TraesCS1A01G054700.2	Wheat	mitochondrion	71.77	29.43
TraesCS1A01G055800.1	Wheat	mitochondrion	67.27	29.05
TraesCS1A01G073600.1	Wheat	mitochondrion	33.63	28.57
TraesCS1A01G067600.1	Wheat	mitochondrion	68.17	27.92
TraesCS1A01G067400.1	Wheat	mitochondrion	67.57	27.27
TraesCS6A01G311600.1	Wheat	mitochondrion	68.17	27.15
TraesCS1A01G031700.1	Wheat	plastid	57.66	25.91
TraesCS1A01G054500.1	Wheat	mitochondrion	59.76	25.51
KXG28799	Sorghum	plastid	55.86	24.47
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	37.24	24.27
TraesCS2A01G530600.1	Wheat	cytosol	54.05	23.53
Zm00001d007531_P001	Maize	plastid	55.86	22.85
Zm00001d007555_P001	Maize	plastid	55.26	22.6
Zm00001d007548_P001	Maize	plastid	54.65	22.36
Zm00001d007559_P001	Maize	plastid	54.65	22.28
Zm00001d007534_P001	Maize	plastid	49.25	21.11
TraesCS1A01G067000.1	Wheat	mitochondrion	43.84	20.39
TraesCS1A01G057300.1	Wheat	cytosol	43.54	20.2
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	41.44	19.33
Solyc06g007280.2.1	Tomato	cytosol	14.71	19.22
TraesCS2A01G526200.1	Wheat	golgi	38.74	18.94
TraesCS2A01G531000.1	Wheat	golgi	37.84	18.56
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	42.34	18.41
TraesCS1A01G031600.1	Wheat	cytosol	36.04	18.13
TraesCS1A01G054800.1	Wheat	cytosol	29.73	17.01
KRH40513	Soybean	plastid	16.82	15.95
AT1G62914.1	Thale cress	mitochondrion	24.32	15.34
KRH39054	Soybean	cytosol	22.22	14.89
VIT_14s0030g02280.t01	Wine grape	plastid	24.92	14.79
KRH39112	Soybean	cytosol	21.92	14.69
VIT_12s0028g02320.t01	Wine grape	mitochondrion	21.02	14.68
KRH09084	Soybean	plastid	21.92	14.29
AT1G63400.1	Thale cress	cytosol, plastid	24.62	14.21
KRH39004	Soybean	cytosol	21.02	14.08
KRH39057	Soybean	cytosol	21.02	14.08
KRH17148	Soybean	mitochondrion	22.82	13.95
KRH39072	Soybean	cytosol	20.72	13.91
KRH08636	Soybean	cytosol	21.62	13.79
KRH39074	Soybean	cytosol	20.42	13.68
AT1G63080.3	Thale cress	mitochondrion	25.23	13.68
KRH08639	Soybean	mitochondrion, plastid	22.82	13.45
KRH08628	Soybean	plastid	22.22	13.41
KRH08671	Soybean	cytosol, mitochondrion	22.22	13.38
AT1G63330.2	Thale cress	cytosol	22.22	13.24
Os04t0351333-00	Rice	cytosol	34.83	13.2
AT1G63130.1	Thale cress	mitochondrion	24.92	13.17
KRH39066	Soybean	cytosol	21.92	13.15
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.82	13.07
KRH09097	Soybean	plastid	22.82	13.04
VIT_14s0081g00120.t01	Wine grape	plastid	22.82	13.04
KRH09121	Soybean	mitochondrion	20.72	12.92
Bra021192.1-P	Field mustard	plastid	19.52	12.9
AT1G63070.1	Thale cress	mitochondrion	22.82	12.88
AT1G62670.1	Thale cress	mitochondrion	24.32	12.86
KRH48615	Soybean	mitochondrion	21.02	12.84
KRH09154	Soybean	mitochondrion	21.32	12.77
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.12	12.76
VIT_14s0081g00270.t01	Wine grape	plastid	22.22	12.76
AT5G16640.1	Thale cress	mitochondrion	19.22	12.7
KRH08277	Soybean	plastid	21.62	12.7
KRH08625	Soybean	plastid	21.92	12.67
AT1G62910.1	Thale cress	mitochondrion	24.02	12.66
KRH09095	Soybean	plastid	22.22	12.65
KRH39050	Soybean	mitochondrion	20.12	12.59
KRH40400	Soybean	plastid	21.62	12.48
KRH08607	Soybean	cytosol	21.02	12.48
AT1G62930.1	Thale cress	plastid	23.42	12.4
AT1G63150.1	Thale cress	mitochondrion	23.42	12.4
Bra026971.1-P	Field mustard	mitochondrion	23.42	12.4
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.42	12.21
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.52	12.12
KRH41817	Soybean	mitochondrion	20.12	12.07
AT4G26800.2	Thale cress	mitochondrion, plastid	18.62	12.06
Bra027026.1-P	Field mustard	mitochondrion	18.92	12.05
Bra016762.1-P	Field mustard	mitochondrion	21.92	12.03
AT1G62590.1	Thale cress	mitochondrion	22.82	11.99
Bra028267.1-P	Field mustard	mitochondrion	22.52	11.98
Bra026958.1-P	Field mustard	mitochondrion	22.82	11.93
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.22	11.92
PGSC0003DMT400053185	Potato	mitochondrion	21.02	11.86
Solyc06g007740.1.1	Tomato	cytosol	21.02	11.86
AT3G16710.1	Thale cress	mitochondrion	18.02	11.83
VIT_14s0081g00110.t01	Wine grape	cytosol	17.42	11.81
AT1G12775.1	Thale cress	cytosol, mitochondrion	22.82	11.8
AT1G06580.1	Thale cress	mitochondrion	17.72	11.8
AT1G12300.1	Thale cress	mitochondrion	22.52	11.77
PGSC0003DMT400025074	Potato	cytosol	19.22	11.59
Bra036651.1-P	Field mustard	mitochondrion	18.62	11.59
AT1G12700.2	Thale cress	cytosol	21.32	11.49
PGSC0003DMT400053556	Potato	mitochondrion	15.62	11.33
PGSC0003DMT400008757	Potato	cytosol	16.82	11.24
Bra026954.1-P	Field mustard	mitochondrion	21.92	11.23
Bra026401.1-P	Field mustard	plastid	18.02	11.21
AT1G62720.1	Thale cress	mitochondrion	16.22	11.13
KRH31646	Soybean	cytosol	17.12	11.0
Bra036649.1-P	Field mustard	cytosol	12.91	11.0
Solyc06g007300.1.1	Tomato	extracellular	19.52	10.98
PGSC0003DMT400056663	Potato	plastid	19.22	10.88
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.72	10.87
Bra026882.1-P	Field mustard	cytosol	17.42	10.86
PGSC0003DMT400053182	Potato	cytosol	19.52	10.85
AT5G41170.1	Thale cress	mitochondrion	17.12	10.82
Bra026957.1-P	Field mustard	mitochondrion	19.52	10.78
AT1G62680.2	Thale cress	plastid	17.72	10.77
PGSC0003DMT400025067	Potato	cytosol	15.32	10.71
PGSC0003DMT400015293	Potato	mitochondrion	19.52	10.66
PGSC0003DMT400015298	Potato	mitochondrion	19.52	10.66
Solyc04g080120.1.1	Tomato	extracellular	19.52	10.62
PGSC0003DMT400008760	Potato	mitochondrion	18.62	10.58
KRH25652	Soybean	cytosol, golgi	17.12	10.56
AT1G64583.1	Thale cress	mitochondrion	16.22	10.55
PGSC0003DMT400056665	Potato	mitochondrion	18.62	10.53
AT1G64580.1	Thale cress	mitochondrion	16.52	10.52
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.62	10.51
PGSC0003DMT400052971	Potato	mitochondrion	18.62	10.46
KRH09085	Soybean	mitochondrion	21.92	10.37
Solyc06g005220.2.1	Tomato	cytosol	12.61	10.34
KRH08599	Soybean	cytosol, plastid	20.42	10.16
AT1G64100.2	Thale cress	cytosol	23.42	9.68
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.81	9.64
Bra026884.1-P	Field mustard	cytosol	12.91	9.37
TraesCS2A01G531100.1	Wheat	cytosol	15.92	9.31
Bra031731.1-P	Field mustard	mitochondrion	14.11	9.25
Bra027636.1-P	Field mustard	cytosol	8.71	8.95
KRH12873	Soybean	cytosol	18.32	8.76
KXG35774	Sorghum	cytosol, mitochondrion	12.31	8.67
TraesCS6A01G083000.1	Wheat	cytosol	11.71	8.55
Bra027726.1-P	Field mustard	mitochondrion	12.01	8.49
Bra026836.1-P	Field mustard	cytosol, mitochondrion	12.31	8.35
KRH09082	Soybean	cytosol	9.91	8.09
PGSC0003DMT400052977	Potato	cytosol	9.31	7.97
KRH39064	Soybean	cytosol	23.12	7.95
Bra027656.1-P	Field mustard	cytosol	21.92	7.76
Bra006187.1-P	Field mustard	plastid	6.61	7.56
Bra027029.1-P	Field mustard	mitochondrion	4.8	6.58
Bra016758.1-P	Field mustard	plastid	21.02	6.04
PGSC0003DMT400008759	Potato	cytosol	4.5	4.7
VIT_14s0030g02260.t01	Wine grape	cytosol	5.41	4.06
TraesCS6A01G014600.1	Wheat	cytosol	3.9	3.29
Solyc06g007810.1.1	Tomato	cytosol	0.9	1.12
CDX68679	Canola	cytosol	0.0	0.0
TraesCS1A01G055600.1	Wheat	cytosol	0.0	0.0
TraesCS1A01G056000.1	Wheat	cytosol	0.0	0.0
TraesCS1A01G067800.1	Wheat	cytosol	0.0	0.0
TraesCS1A01G073700.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1A01G073800.1	EnsemblPlantsGene:TraesCS1A01G073800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1A:-:57404833..57405834

Molecular Weight (calculated)

37019.1 Da

IEP (calculated)

8.739

GRAVY (calculated)

-0.059

Length

333 amino acids

Sequence
(BLAST)

001: MPRLYPTTPM LRLLPLPSRR WDPRGAFASA TERARAGTLS PEDAHHLFDE LLLQANPVPE RSLNGFLAAL ARAPSSAALR DGPSLALGLF NRVCREEAGP
101: RVVPPTVCTY NILMDSCCRA RRPDLGLAFF DRFLRMGLKA DQIVANNLLK CLCHARRTHE AINVLLHRMS EFGCVPNVIS YSIVLKSLCD DSRSQQAFDL
201: LQMVRKEGGA GSLNVVAYST VIHAFFKEGE ASKACDLFHE MMQQGIVPNV VTYSSIIDAL CKVRAMDKAK LVLQQMVDNG VRPNMYTWNS FMYSLCKNGR
301: SKEAAEFFDS MTPKGLKPNI VVYSTLLHGY ASE

Best Arabidopsis Sequence Match ( AT1G12700.1 )
(BLAST)

001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
601: LS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.