Factsheet for TraesCS2A01G530300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G531000.1	Wheat	golgi	87.87	66.13
TraesCS2A01G526200.1	Wheat	golgi	84.74	63.58
TraesCS2A01G531100.1	Wheat	cytosol	69.08	62.04
TraesCS2A01G530600.1	Wheat	cytosol	88.06	58.82
TraesCS1A01G067700.1	Wheat	extracellular	34.05	51.63
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	35.03	47.35
TraesCS1A01G031600.1	Wheat	cytosol	53.42	41.24
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	38.55	39.16
TraesCS1A01G057300.1	Wheat	cytosol	54.6	38.86
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	36.59	38.64
TraesCS1A01G031700.1	Wheat	plastid	55.97	38.6
TraesCS1A01G067000.1	Wheat	mitochondrion	52.84	37.71
TraesCS1A01G073800.1	Wheat	mitochondrion	24.27	37.24
TraesCS1A01G054800.1	Wheat	cytosol	42.27	37.11
TraesCS1A01G054500.1	Wheat	mitochondrion	55.58	36.41
TraesCS1A01G067600.1	Wheat	mitochondrion	56.95	35.79
TraesCS6A01G083000.1	Wheat	cytosol	31.9	35.75
TraesCS1A01G067400.1	Wheat	mitochondrion	57.34	35.52
TraesCS1A01G054700.2	Wheat	mitochondrion	56.16	35.34
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	49.32	35.15
TraesCS6A01G015000.1	Wheat	mitochondrion	28.38	34.94
TraesCS1A01G055800.1	Wheat	mitochondrion	51.47	34.11
TraesCS6A01G311600.1	Wheat	mitochondrion	55.38	33.85
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	44.42	31.79
TraesCS6A01G014600.1	Wheat	cytosol	23.29	30.13
Solyc06g007280.2.1	Tomato	cytosol	14.87	29.8
VIT_12s0028g02320.t01	Wine grape	mitochondrion	27.2	29.14
Bra036649.1-P	Field mustard	cytosol	21.53	28.13
KRH40513	Soybean	plastid	18.98	27.64
TraesCS1A01G056000.1	Wheat	cytosol	21.72	27.61
TraesCS1A01G073700.1	Wheat	cytosol	20.74	27.53
Bra027636.1-P	Field mustard	cytosol	17.42	27.47
KRH39054	Soybean	cytosol	26.61	27.36
Bra006187.1-P	Field mustard	plastid	15.46	27.15
TraesCS1A01G067800.1	Wheat	cytosol	19.77	27.01
KRH39004	Soybean	cytosol	26.22	26.96
KRH39057	Soybean	cytosol	26.22	26.96
KRH39112	Soybean	cytosol	26.22	26.96
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	26.61	26.93
TraesCS1A01G073600.1	Wheat	mitochondrion	20.55	26.79
KRH39074	Soybean	cytosol	26.03	26.76
Bra027029.1-P	Field mustard	mitochondrion	12.72	26.75
VIT_14s0081g00110.t01	Wine grape	cytosol	25.64	26.68
TraesCS1A01G074000.1	Wheat	mitochondrion	14.68	26.5
Solyc06g005220.2.1	Tomato	cytosol	20.94	26.35
TraesCS1A01G066600.1	Wheat	mitochondrion	13.5	26.24
KRH08636	Soybean	cytosol	26.61	26.05
KRH39072	Soybean	cytosol	25.24	26.01
AT5G16640.1	Thale cress	mitochondrion	25.44	25.79
PGSC0003DMT400052977	Potato	cytosol	19.37	25.45
KRH08628	Soybean	plastid	27.4	25.36
TraesCS1A01G055500.1	Wheat	mitochondrion	10.76	25.35
KRH08607	Soybean	cytosol	27.79	25.31
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	12.52	25.3
KRH39050	Soybean	mitochondrion	26.03	25.0
TraesCS1A01G055600.1	Wheat	cytosol	15.85	24.92
KRH08277	Soybean	plastid	27.59	24.87
KRH09084	Soybean	plastid	24.85	24.85
KRH09082	Soybean	cytosol	19.77	24.75
KRH17148	Soybean	mitochondrion	26.22	24.59
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	25.24	24.57
KRH25652	Soybean	cytosol, golgi	25.83	24.44
KRH39066	Soybean	cytosol	26.42	24.32
KRH09121	Soybean	mitochondrion	25.24	24.16
KRH08671	Soybean	cytosol, mitochondrion	26.03	24.05
VIT_14s0081g00120.t01	Wine grape	plastid	27.4	24.01
VIT_14s0081g00270.t01	Wine grape	plastid	27.2	23.97
PGSC0003DMT400025067	Potato	cytosol	22.31	23.95
KRH40400	Soybean	plastid	27.01	23.92
KRH08639	Soybean	mitochondrion, plastid	26.42	23.89
AT3G16710.1	Thale cress	mitochondrion	23.68	23.87
PGSC0003DMT400008759	Potato	cytosol	14.87	23.82
KRH08625	Soybean	plastid	26.81	23.78
KRH09154	Soybean	mitochondrion	25.64	23.56
VIT_14s0030g02280.t01	Wine grape	plastid	25.83	23.53
Solyc06g007810.1.1	Tomato	cytosol	12.33	23.51
Bra026882.1-P	Field mustard	cytosol	24.46	23.41
KRH31646	Soybean	cytosol	23.68	23.36
Bra025516.1-P	Field mustard	cytosol, mitochondrion	21.72	23.27
PGSC0003DMT400025087	Potato	endoplasmic reticulum	22.5	23.23
KRH48615	Soybean	mitochondrion	24.46	22.94
AT1G63330.2	Thale cress	cytosol	25.05	22.9
AT1G62720.1	Thale cress	mitochondrion	21.72	22.89
Bra021192.1-P	Field mustard	plastid	22.5	22.82
AT1G64583.1	Thale cress	mitochondrion	22.5	22.46
AT1G63400.1	Thale cress	cytosol, plastid	25.24	22.36
PGSC0003DMT400008757	Potato	cytosol	21.72	22.29
Bra036651.1-P	Field mustard	mitochondrion	23.29	22.24
AT5G41170.1	Thale cress	mitochondrion	22.9	22.2
AT1G06580.1	Thale cress	mitochondrion	21.72	22.2
KRH09097	Soybean	plastid	25.24	22.13
AT1G64580.1	Thale cress	mitochondrion	22.5	21.99
Bra027026.1-P	Field mustard	mitochondrion	22.5	21.99
VIT_14s0081g00280.t01	Wine grape	mitochondrion	27.4	21.91
AT1G62670.1	Thale cress	mitochondrion	26.81	21.75
PGSC0003DMT400025074	Potato	cytosol	23.48	21.74
KRH09095	Soybean	plastid	24.85	21.71
AT1G63080.3	Thale cress	mitochondrion	26.03	21.66
Bra026884.1-P	Field mustard	cytosol	19.37	21.57
AT1G62914.1	Thale cress	mitochondrion	22.11	21.4
Bra026971.1-P	Field mustard	mitochondrion	26.22	21.3
KRH41817	Soybean	mitochondrion	23.09	21.26
AT1G62930.1	Thale cress	plastid	26.03	21.14
AT1G63130.1	Thale cress	mitochondrion	26.03	21.11
AT1G12300.1	Thale cress	mitochondrion	26.22	21.04
PGSC0003DMT400053185	Potato	mitochondrion	24.27	21.02
CDX68679	Canola	cytosol	4.7	20.87
AT1G63070.1	Thale cress	mitochondrion	24.07	20.85
AT1G62680.2	Thale cress	plastid	22.31	20.8
AT1G12620.1	Thale cress	cytosol, mitochondrion	25.24	20.77
PGSC0003DMT400053556	Potato	mitochondrion	18.59	20.7
Bra028267.1-P	Field mustard	mitochondrion	25.05	20.45
Bra016762.1-P	Field mustard	mitochondrion	24.27	20.43
AT1G62910.1	Thale cress	mitochondrion	25.24	20.41
Solyc06g007740.1.1	Tomato	cytosol	23.48	20.34
Bra027658.1-P	Field mustard	cytosol, mitochondrion	21.53	20.26
PGSC0003DMT400056665	Potato	mitochondrion	23.29	20.2
AT3G22470.1	Thale cress	cytosol, mitochondrion	24.46	20.19
AT1G63150.1	Thale cress	mitochondrion	24.85	20.19
PGSC0003DMT400015293	Potato	mitochondrion	24.07	20.16
PGSC0003DMT400015298	Potato	mitochondrion	24.07	20.16
Bra026958.1-P	Field mustard	mitochondrion	25.05	20.09
Bra031731.1-P	Field mustard	mitochondrion	19.96	20.08
AT4G26800.2	Thale cress	mitochondrion, plastid	20.16	20.04
AT1G62590.1	Thale cress	mitochondrion	24.85	20.03
KRH08599	Soybean	cytosol, plastid	26.22	20.03
Solyc04g080120.1.1	Tomato	extracellular	23.87	19.93
Solyc06g007300.1.1	Tomato	extracellular	23.09	19.93
PGSC0003DMT400056663	Potato	plastid	22.9	19.9
Bra026401.1-P	Field mustard	plastid	20.74	19.81
AT1G12700.2	Thale cress	cytosol	23.68	19.58
Bra026957.1-P	Field mustard	mitochondrion	22.9	19.4
PGSC0003DMT400052971	Potato	mitochondrion	22.5	19.39
Bra026954.1-P	Field mustard	mitochondrion	24.46	19.23
PGSC0003DMT400008760	Potato	mitochondrion	21.92	19.11
AT1G12775.1	Thale cress	cytosol, mitochondrion	24.07	19.1
VIT_14s0030g02260.t01	Wine grape	cytosol	16.05	18.51
Bra027726.1-P	Field mustard	mitochondrion	16.83	18.26
PGSC0003DMT400053182	Potato	cytosol	21.14	18.03
Bra026836.1-P	Field mustard	cytosol, mitochondrion	17.03	17.72
KRH09085	Soybean	mitochondrion	23.48	17.05
KRH12873	Soybean	cytosol	22.11	16.24
AT1G64100.2	Thale cress	cytosol	25.44	16.13
Bra027656.1-P	Field mustard	cytosol	27.2	14.77
KRH39064	Soybean	cytosol	26.03	13.73
Bra016758.1-P	Field mustard	plastid	24.66	10.87

Protein Annotations

EnsemblPlants:TraesCS2A01G530300.1	EnsemblPlantsGene:TraesCS2A01G530300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:748204284..748209758

Molecular Weight (calculated)

56374.0 Da

IEP (calculated)

7.310

GRAVY (calculated)

0.080

Length

511 amino acids

Sequence
(BLAST)

001: MSRGAGARVV SPTLSTYSIL MDCCCRARRP ELVVAFFGRL LRLGLRLDII SSSNLLKGLC QAKRSNEALD MLLHRMPELD CAPDVFSFNI VINGCFKEGE
101: VDKACNLFHE MPQLGVQPDV VTYTSIMDAL SKSGAMDKAE VLLRQMVDQG IEPNIKTYNC LIHGYSTFGQ WKAAVRVFKE MASVGVQPNA VTLNSLIDSL
201: CKHRRTKEAR EILDSMAAKG LKPNIVSYST MLNGYVKEGC FDDMTDLFNS MVRNGIVPNH HIFNILINAY AKRGVMDEAM HMFEVMRQQG VNPDVFSYQI
301: VMDSLCKMGR MDAALDKFNQ MVNQGVSPNK AVYQCLVLGS CSHGHFVKAK ELISEVVNRG LCSNSVFFYP VINGLCKEGK VKEAQDMFDF ILGIGQRPDV
401: IMYTSLMDGY CLVGEVEKAL SVLDAMKSAG LQPDDVVYAT LLNGYCKIGR IADGLSLFRE MSLSGVKPMT IIYNIILDGL FCSGRTVCAK EKFNTMTESG
501: IPVGVDTGSS S

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.