Factsheet for TraesCS6A01G014600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	89.11	49.3
TraesCS6A01G083000.1	Wheat	cytosol	53.92	46.71
TraesCS1A01G056000.1	Wheat	cytosol	39.49	38.81
TraesCS1A01G073700.1	Wheat	cytosol	37.47	38.44
HORVU6Hr1G002890.6	Barley	cytosol, plastid	76.71	38.11
TraesCS1A01G067800.1	Wheat	cytosol	34.43	36.36
TraesCS1A01G055600.1	Wheat	cytosol	29.87	36.31
TraesCS2A01G531100.1	Wheat	cytosol	47.34	32.86
Os10t0501700-00	Rice	cytosol	36.96	32.16
Os10t0497300-01	Rice	mitochondrion	58.99	29.35
TraesCS2A01G526200.1	Wheat	golgi	49.87	28.93
TraesCS1A01G031600.1	Wheat	cytosol	47.85	28.55
Os10t0495200-01	Rice	mitochondrion	56.46	28.52
Zm00001d009733_P001	Maize	cytosol	57.22	28.43
HORVU1Hr1G018190.2	Barley	cytosol	20.51	28.42
TraesCS1A01G054800.1	Wheat	cytosol	41.01	27.84
TraesCS2A01G531000.1	Wheat	golgi	47.34	27.54
Os10t0497366-00	Rice	mitochondrion	26.84	26.43
TraesCS1A01G067000.1	Wheat	mitochondrion	47.59	26.26
Os08t0110200-01	Rice	mitochondrion	52.91	26.19
Solyc06g007810.1.1	Tomato	cytosol	17.72	26.12
TraesCS2A01G530600.1	Wheat	cytosol	47.34	24.44
CDX68679	Canola	cytosol	6.84	23.48
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	30.13	23.29
KXG34536	Sorghum	mitochondrion	33.67	23.25
TraesCS1A01G067600.1	Wheat	mitochondrion	47.85	23.25
Zm00001d009735_P001	Maize	cytosol	56.96	23.12
TraesCS1A01G054500.1	Wheat	mitochondrion	45.57	23.08
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	41.52	22.87
PGSC0003DMT400008759	Potato	cytosol	18.23	22.57
TraesCS1A01G057300.1	Wheat	cytosol	41.01	22.56
Os08t0107800-01	Rice	mitochondrion	35.44	22.44
TraesCS1A01G054700.2	Wheat	mitochondrion	45.32	22.04
TraesCS1A01G067400.1	Wheat	mitochondrion	45.32	21.7
TraesCS6A01G311600.1	Wheat	mitochondrion	45.82	21.65
TraesCS1A01G055800.1	Wheat	mitochondrion	42.03	21.53
Bra006187.1-P	Field mustard	plastid	15.19	20.62
Bra027029.1-P	Field mustard	mitochondrion	12.41	20.16
TraesCS1A01G031700.1	Wheat	plastid	37.47	19.97
EER95949	Sorghum	mitochondrion	33.16	19.76
PGSC0003DMT400052977	Potato	cytosol	18.99	19.28
OQU88594	Sorghum	cytosol	25.06	18.97
Bra027636.1-P	Field mustard	cytosol	15.19	18.52
TraesCS6A01G015000.1	Wheat	mitochondrion	19.24	18.31
Solyc06g005220.2.1	Tomato	cytosol	18.73	18.23
Os10t0495100-01	Rice	cytosol, mitochondrion	20.0	17.14
VIT_14s0030g02260.t01	Wine grape	cytosol	18.48	16.48
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	15.44	16.14
OQU88581	Sorghum	cytosol	42.53	15.46
TraesCS1A01G073600.1	Wheat	mitochondrion	15.19	15.31
VIT_14s0081g00110.t01	Wine grape	cytosol	18.99	15.27
Bra026884.1-P	Field mustard	cytosol	17.72	15.25
KRH31646	Soybean	cytosol	19.49	14.86
PGSC0003DMT400008757	Potato	cytosol	18.48	14.66
Bra026882.1-P	Field mustard	cytosol	19.75	14.61
Bra036649.1-P	Field mustard	cytosol	14.43	14.58
KRH09082	Soybean	cytosol	14.94	14.46
Bra026836.1-P	Field mustard	cytosol, mitochondrion	17.97	14.46
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.48	14.46
Os10t0499500-01	Rice	mitochondrion	18.48	14.43
PGSC0003DMT400025067	Potato	cytosol	17.22	14.29
KRH08636	Soybean	cytosol	18.48	13.98
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.47	13.94
Solyc06g007740.1.1	Tomato	cytosol	20.51	13.73
KRH39054	Soybean	cytosol	17.22	13.68
AT1G62680.2	Thale cress	plastid	18.73	13.5
AT1G63330.2	Thale cress	cytosol	18.99	13.42
PGSC0003DMT400025074	Potato	cytosol	18.73	13.41
KRH39057	Soybean	cytosol	16.71	13.28
KRH39074	Soybean	cytosol	16.71	13.28
KRH39112	Soybean	cytosol	16.71	13.28
VIT_14s0081g00120.t01	Wine grape	plastid	19.49	13.21
KRH08671	Soybean	cytosol, mitochondrion	18.48	13.2
AT1G62720.1	Thale cress	mitochondrion	16.2	13.2
Bra036651.1-P	Field mustard	mitochondrion	17.72	13.08
KRH39004	Soybean	cytosol	16.46	13.08
AT3G16710.1	Thale cress	mitochondrion	16.71	13.02
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.7	13.0
KRH39050	Soybean	mitochondrion	17.47	12.97
VIT_14s0081g00270.t01	Wine grape	plastid	18.99	12.93
Solyc06g007300.1.1	Tomato	extracellular	19.24	12.84
PGSC0003DMT400052971	Potato	mitochondrion	19.24	12.82
VIT_12s0028g02320.t01	Wine grape	mitochondrion	15.44	12.79
TraesCS1A01G067700.1	Wheat	extracellular	10.89	12.76
AT1G62930.1	Thale cress	plastid	20.25	12.72
KRH08607	Soybean	cytosol	17.97	12.66
Bra027026.1-P	Field mustard	mitochondrion	16.71	12.62
Bra026958.1-P	Field mustard	mitochondrion	20.25	12.56
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	15.95	12.52
KRH39072	Soybean	cytosol	15.7	12.5
KRH40400	Soybean	plastid	18.23	12.48
KRH48615	Soybean	mitochondrion	17.22	12.48
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	16.46	12.38
PGSC0003DMT400053185	Potato	mitochondrion	18.48	12.37
PGSC0003DMT400053182	Potato	cytosol	18.73	12.35
Bra027726.1-P	Field mustard	mitochondrion	14.68	12.31
AT5G16640.1	Thale cress	mitochondrion	15.7	12.3
Zm00001d018982_P001	Maize	mitochondrion	10.89	12.29
KRH41817	Soybean	mitochondrion	17.22	12.25
AT1G63130.1	Thale cress	mitochondrion	19.49	12.22
PGSC0003DMT400008760	Potato	mitochondrion	17.97	12.12
AT1G64583.1	Thale cress	mitochondrion	15.7	12.11
Bra021192.1-P	Field mustard	plastid	15.44	12.1
AT1G62670.1	Thale cress	mitochondrion	19.24	12.06
KRH08277	Soybean	plastid	17.22	11.99
KRH08625	Soybean	plastid	17.47	11.98
PGSC0003DMT400015293	Potato	mitochondrion	18.48	11.97
PGSC0003DMT400015298	Potato	mitochondrion	18.48	11.97
PGSC0003DMT400056663	Potato	plastid	17.72	11.9
VIT_14s0081g00280.t01	Wine grape	mitochondrion	19.24	11.89
PGSC0003DMT400056665	Potato	mitochondrion	17.72	11.88
AT1G64580.1	Thale cress	mitochondrion	15.7	11.85
KRH25652	Soybean	cytosol, golgi	16.2	11.85
AT1G62590.1	Thale cress	mitochondrion	18.99	11.83
Bra031731.1-P	Field mustard	mitochondrion	15.19	11.81
KRH08628	Soybean	plastid	16.46	11.78
Solyc06g007280.2.1	Tomato	cytosol	7.59	11.76
KRH39066	Soybean	cytosol	16.46	11.71
AT3G22470.1	Thale cress	cytosol, mitochondrion	18.23	11.63
AT1G12620.1	Thale cress	cytosol, mitochondrion	18.23	11.59
Os08t0248400-01	Rice	mitochondrion	12.91	11.59
KRH08639	Soybean	mitochondrion, plastid	16.46	11.5
AT1G12700.2	Thale cress	cytosol	17.97	11.49
Solyc04g080120.1.1	Tomato	extracellular	17.72	11.44
Bra027658.1-P	Field mustard	cytosol, mitochondrion	15.7	11.42
KRH40513	Soybean	plastid	10.13	11.4
AT1G62910.1	Thale cress	mitochondrion	18.23	11.39
AT5G41170.1	Thale cress	mitochondrion	15.19	11.39
KRH17148	Soybean	mitochondrion	15.7	11.38
KRH09154	Soybean	mitochondrion	15.95	11.33
AT1G12300.1	Thale cress	mitochondrion	18.23	11.3
Bra026971.1-P	Field mustard	mitochondrion	17.97	11.29
Bra026954.1-P	Field mustard	mitochondrion	18.48	11.23
Bra028267.1-P	Field mustard	mitochondrion	17.72	11.18
AT1G63150.1	Thale cress	mitochondrion	17.72	11.13
AT1G63080.3	Thale cress	mitochondrion	17.22	11.07
Bra016762.1-P	Field mustard	mitochondrion	16.96	11.04
AT1G63070.1	Thale cress	mitochondrion	16.46	11.02
KRH09084	Soybean	plastid	14.18	10.96
AT1G63400.1	Thale cress	cytosol, plastid	15.95	10.92
KRH09121	Soybean	mitochondrion	14.68	10.86
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	13.16	10.74
Bra026957.1-P	Field mustard	mitochondrion	16.2	10.61
AT1G06580.1	Thale cress	mitochondrion	13.42	10.6
AT1G12775.1	Thale cress	cytosol, mitochondrion	17.22	10.56
VIT_14s0030g02280.t01	Wine grape	plastid	14.94	10.52
PGSC0003DMT400053556	Potato	mitochondrion	12.15	10.46
Bra026401.1-P	Field mustard	plastid	13.92	10.28
AT4G26800.2	Thale cress	mitochondrion, plastid	13.16	10.12
AT1G64100.2	Thale cress	cytosol	20.25	9.93
KRH08599	Soybean	cytosol, plastid	15.95	9.42
AT1G62914.1	Thale cress	mitochondrion	12.41	9.28
KRH09097	Soybean	plastid	13.67	9.26
KRH09095	Soybean	plastid	13.67	9.23
KRH12873	Soybean	cytosol	15.95	9.05
Bra027656.1-P	Field mustard	cytosol	21.01	8.82
KRH09085	Soybean	mitochondrion	15.44	8.66
KRH39064	Soybean	cytosol	17.97	7.33
Os08t0107700-01	Rice	cytosol, mitochondrion	6.08	6.42
Bra016758.1-P	Field mustard	plastid	17.72	6.04
TraesCSU01G089800.1	Wheat	mitochondrion	5.32	5.98
TraesCS1A01G073800.1	Wheat	mitochondrion	3.29	3.9
TraesCS1A01G074000.1	Wheat	mitochondrion	0.51	0.71
TraesCS1A01G055500.1	Wheat	mitochondrion	0.25	0.46
TraesCS1A01G066600.1	Wheat	mitochondrion	0.25	0.38
Os10t0497432-01	Rice	mitochondrion	0.25	0.38
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6A01G014600.1	EnsemblPlantsGene:TraesCS6A01G014600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:7080576..7081763

Molecular Weight (calculated)

44116.8 Da

IEP (calculated)

4.958

GRAVY (calculated)

0.003

Length

395 amino acids

Sequence
(BLAST)

001: MVSLGQKPTV TTYSILLHGY AMEQSFHEMH CLIDLMVGNG IAPNHFVYNI LISAYAQEET VGEVMHIFTK MRQEGLNPDV ANYGAVINLL SSIGRMDDAM
101: SQYNQMITEG LLPGIIVFTP LISGFCSCGK WEKVDELFSE MLDRGICPDT VFFNTVMDHL CKNGRVIEAQ DLFDLMVHMG VKPFVRDYNT LIHGYCLVGK
201: MDEGRKLLDN MCSIGLKPDD FTYSILIDGY SMKGRIGDAL IVVREMLDRK VKPSIITFNI MIGALLKGGR KEEAKDLFDG IWAKGLVPDV VTYRLMIQKL
301: IEEGSLQDSD DLFLSMEKNG CVADSRMLNA IVRSLLQKGD VPRAGTYLSK IDERRFTFEA STASLLTSLA SGGKGQEYKE LLPEEYHSFL EQGTG

Best Arabidopsis Sequence Match ( AT1G12620.1 )
(BLAST)

001: MRGLIQTRLL ETGTLRTALF LSCYGRVFSS VSDGKGKVSY RERLRSGIVD IKEDDAVDLF QEMTRSRPRP RLIDFSRLFS VVARTKQYDL VLDLCKQMEL
101: KGIAHNLYTL SIMINCCCRC RKLSLAFSAM GKIIKLGYEP DTVTFSTLIN GLCLEGRVSE ALELVDRMVE MGHKPTLITL NALVNGLCLN GKVSDAVLLI
201: DRMVETGFQP NEVTYGPVLK VMCKSGQTAL AMELLRKMEE RKIKLDAVKY SIIIDGLCKD GSLDNAFNLF NEMEIKGFKA DIIIYTTLIR GFCYAGRWDD
301: GAKLLRDMIK RKITPDVVAF SALIDCFVKE GKLREAEELH KEMIQRGISP DTVTYTSLID GFCKENQLDK ANHMLDLMVS KGCGPNIRTF NILINGYCKA
401: NLIDDGLELF RKMSLRGVVA DTVTYNTLIQ GFCELGKLEV AKELFQEMVS RRVRPDIVSY KILLDGLCDN GEPEKALEIF EKIEKSKMEL DIGIYNIIIH
501: GMCNASKVDD AWDLFCSLPL KGVKPDVKTY NIMIGGLCKK GSLSEADLLF RKMEEDGHSP NGCTYNILIR AHLGEGDATK SAKLIEEIKR CGFSVDASTV
601: KMVVDMLSDG RLKKSFLDML S

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12620 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.