CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	EER91265	AT4G26630.1	25387881
AT1G62670.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34536	Sorghum	mitochondrion	81.15	94.06
OQU88594	Sorghum	cytosol	62.44	79.31
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	22.93	60.08
TraesCSU01G089800.1	Wheat	mitochondrion	30.62	57.83
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	27.9	56.92
TraesCSU01G089700.1	Wheat	mitochondrion	41.18	56.64
TraesCSU01G090200.1	Wheat	cytosol	37.56	56.33
HORVU1Hr1G018190.2	Barley	cytosol	23.53	54.74
TraesCS6A01G015000.1	Wheat	mitochondrion	33.48	53.49
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	30.32	53.03
OQU82832	Sorghum	cytosol	22.62	52.45
TraesCS6D01G076500.1	Wheat	plastid	34.99	51.21
HORVU6Hr1G014310.1	Barley	mitochondrion	47.66	46.0
TraesCS6D01G047700.1	Wheat	mitochondrion	47.66	45.73
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	49.17	45.66
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	48.42	44.9
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	48.11	44.62
TraesCS6B01G021600.1	Wheat	mitochondrion	47.81	44.27
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	47.66	44.2
TraesCS6D01G017800.1	Wheat	cytosol	33.18	40.97
TraesCS6A01G083000.1	Wheat	cytosol	27.75	40.35
OQU82856	Sorghum	cytosol	44.65	39.36
HORVU6Hr1G002890.6	Barley	cytosol, plastid	46.61	38.87
KXG27690	Sorghum	cytosol, plastid	42.38	38.44
TraesCS6D01G017700.1	Wheat	plastid	30.77	38.2
EES07882	Sorghum	cytosol	44.65	38.1
OQU82827	Sorghum	cytosol	45.4	37.77
OQU82823	Sorghum	cytosol	45.25	37.64
TraesCS6B01G114300.1	Wheat	cytosol	21.87	37.28
OQU80148	Sorghum	mitochondrion	39.52	36.04
OQU88581	Sorghum	cytosol	58.97	35.97
OQU82836	Sorghum	cytosol	32.88	35.62
EES09203	Sorghum	cytosol	42.84	35.59
KXG28799	Sorghum	plastid	39.82	34.74
OQU82831	Sorghum	cytosol	31.98	34.58
Solyc06g007280.2.1	Tomato	cytosol	13.12	34.12
Bra027636.1-P	Field mustard	cytosol	16.29	33.33
KXG19780	Sorghum	cytosol	29.71	33.33
TraesCS6A01G014600.1	Wheat	cytosol	19.76	33.16
KRH40513	Soybean	plastid	17.35	32.76
VIT_12s0028g02320.t01	Wine grape	mitochondrion	22.78	31.66
AT1G63400.1	Thale cress	cytosol, plastid	26.85	30.85
KRH39050	Soybean	mitochondrion	24.74	30.83
Bra027029.1-P	Field mustard	mitochondrion	11.16	30.45
AT1G63330.2	Thale cress	cytosol	25.64	30.41
KRH39054	Soybean	cytosol	22.78	30.38
Bra036649.1-P	Field mustard	cytosol	17.8	30.18
KRH39057	Soybean	cytosol	22.47	29.98
AT1G62914.1	Thale cress	mitochondrion	23.83	29.92
KRH39074	Soybean	cytosol	22.32	29.78
KRH39004	Soybean	cytosol	22.17	29.58
AT1G64583.1	Thale cress	mitochondrion	22.62	29.3
OQU82834	Sorghum	cytosol	42.53	29.28
Bra021192.1-P	Field mustard	plastid	22.17	29.17
KRH39072	Soybean	cytosol	21.72	29.03
Bra036651.1-P	Field mustard	mitochondrion	23.38	28.97
AT1G62930.1	Thale cress	plastid	27.3	28.78
AT3G16710.1	Thale cress	mitochondrion	21.87	28.6
AT5G16640.1	Thale cress	mitochondrion	21.72	28.57
Solyc06g005220.2.1	Tomato	cytosol	17.5	28.57
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	22.47	28.38
AT1G63080.3	Thale cress	mitochondrion	26.24	28.34
KXG35774	Sorghum	cytosol, mitochondrion	20.21	28.33
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.57	28.32
AT1G63150.1	Thale cress	mitochondrion	26.85	28.3
KRH39112	Soybean	cytosol	21.12	28.17
AT1G63130.1	Thale cress	mitochondrion	26.7	28.1
Bra025516.1-P	Field mustard	cytosol, mitochondrion	20.21	28.09
Bra026882.1-P	Field mustard	cytosol	22.62	28.09
KRH48615	Soybean	mitochondrion	23.08	28.07
AT1G62720.1	Thale cress	mitochondrion	20.51	28.04
AT1G64580.1	Thale cress	mitochondrion	22.02	27.92
AT1G06580.1	Thale cress	mitochondrion	20.97	27.8
AT1G62670.1	Thale cress	mitochondrion	26.4	27.78
AT1G12620.1	Thale cress	cytosol, mitochondrion	25.94	27.7
AT1G62910.1	Thale cress	mitochondrion	26.4	27.69
AT1G12300.1	Thale cress	mitochondrion	26.55	27.63
AT1G62590.1	Thale cress	mitochondrion	26.4	27.6
KRH41817	Soybean	mitochondrion	23.08	27.57
AT3G22470.1	Thale cress	cytosol, mitochondrion	25.64	27.46
KRH08636	Soybean	cytosol	21.57	27.39
KRH39066	Soybean	cytosol	22.93	27.39
Bra027026.1-P	Field mustard	mitochondrion	21.57	27.34
KRH08671	Soybean	cytosol, mitochondrion	22.78	27.31
KRH31646	Soybean	cytosol	21.27	27.22
PGSC0003DMT400008757	Potato	cytosol	20.36	27.11
VIT_14s0081g00270.t01	Wine grape	plastid	23.53	26.9
AT1G62680.2	Thale cress	plastid	22.17	26.82
KRH08277	Soybean	plastid	22.93	26.81
Bra006187.1-P	Field mustard	plastid	11.76	26.8
AT1G63070.1	Thale cress	mitochondrion	23.83	26.78
Bra016762.1-P	Field mustard	mitochondrion	24.43	26.69
KRH17148	Soybean	mitochondrion	21.87	26.61
VIT_14s0081g00120.t01	Wine grape	plastid	23.38	26.59
Bra026884.1-P	Field mustard	cytosol	18.4	26.58
Bra026971.1-P	Field mustard	mitochondrion	25.19	26.55
KRH08639	Soybean	mitochondrion, plastid	22.62	26.55
KRH09084	Soybean	plastid	20.36	26.42
VIT_14s0030g02280.t01	Wine grape	plastid	22.32	26.38
VIT_14s0081g00110.t01	Wine grape	cytosol	19.46	26.27
KRH08628	Soybean	plastid	21.87	26.27
Bra028267.1-P	Field mustard	mitochondrion	24.74	26.2
AT5G41170.1	Thale cress	mitochondrion	20.81	26.19
KRH09154	Soybean	mitochondrion	21.87	26.08
Bra026958.1-P	Field mustard	mitochondrion	25.04	26.06
Bra027658.1-P	Field mustard	cytosol, mitochondrion	21.12	25.78
PGSC0003DMT400025074	Potato	cytosol	21.42	25.72
PGSC0003DMT400053556	Potato	mitochondrion	17.8	25.71
KRH08625	Soybean	plastid	22.32	25.69
KRH40400	Soybean	plastid	22.32	25.65
AT1G12775.1	Thale cress	cytosol, mitochondrion	24.74	25.47
KRH08607	Soybean	cytosol	21.42	25.31
AT4G26800.2	Thale cress	mitochondrion, plastid	19.61	25.29
VIT_14s0081g00280.t01	Wine grape	mitochondrion	24.28	25.2
PGSC0003DMT400015293	Potato	mitochondrion	23.08	25.08
PGSC0003DMT400015298	Potato	mitochondrion	23.08	25.08
Bra026954.1-P	Field mustard	mitochondrion	24.59	25.08
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.7	25.05
KRH25652	Soybean	cytosol, golgi	20.36	25.0
PGSC0003DMT400056665	Potato	mitochondrion	22.17	24.96
Solyc06g007740.1.1	Tomato	cytosol	22.17	24.92
PGSC0003DMT400052977	Potato	cytosol	14.48	24.68
Solyc04g080120.1.1	Tomato	extracellular	22.78	24.67
OQU82833	Sorghum	cytosol	16.59	24.55
PGSC0003DMT400008759	Potato	cytosol	11.76	24.45
Solyc06g007300.1.1	Tomato	extracellular	21.72	24.32
Bra026836.1-P	Field mustard	cytosol, mitochondrion	17.95	24.24
Bra031731.1-P	Field mustard	mitochondrion	18.55	24.21
Bra027726.1-P	Field mustard	mitochondrion	17.19	24.2
KRH09121	Soybean	mitochondrion	19.46	24.16
PGSC0003DMT400008760	Potato	mitochondrion	21.27	24.06
KRH09082	Soybean	cytosol	14.78	24.02
PGSC0003DMT400025067	Potato	cytosol	17.19	23.95
Solyc06g007810.1.1	Tomato	cytosol	9.65	23.88
PGSC0003DMT400056663	Potato	plastid	21.12	23.81
PGSC0003DMT400053185	Potato	mitochondrion	20.81	23.39
AT1G12700.2	Thale cress	cytosol	21.72	23.3
Bra026957.1-P	Field mustard	mitochondrion	21.12	23.22
PGSC0003DMT400052971	Potato	mitochondrion	20.66	23.1
KRH09095	Soybean	plastid	20.36	23.08
Bra026401.1-P	Field mustard	plastid	18.55	22.99
KRH09097	Soybean	plastid	20.21	22.98
PGSC0003DMT400053182	Potato	cytosol	20.21	22.37
KRH08599	Soybean	cytosol, plastid	21.57	21.38
AT1G64100.2	Thale cress	cytosol	25.19	20.72
Bra027656.1-P	Field mustard	cytosol	28.51	20.09
VIT_14s0030g02260.t01	Wine grape	cytosol	12.67	18.96
KRH09085	Soybean	mitochondrion	19.76	18.61
KRH12873	Soybean	cytosol	16.89	16.09
KRH39064	Soybean	cytosol	23.08	15.79
CDX68679	Canola	cytosol	2.71	15.65
Bra016758.1-P	Field mustard	plastid	25.49	14.58

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:C5XB23	EnsemblPlants:EER95949	ProteinID:EER95949	ProteinID:EER95949.2
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF12854
PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF302	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G054200	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00081AC33E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:5171437..5175210

Molecular Weight (calculated)

73461.5 Da

IEP (calculated)

6.991

GRAVY (calculated)

-0.079

Length

663 amino acids

Sequence
(BLAST)

001: MSSRTCLKKL KRIIGRRIRS GSLSAEAARQ LWNEVLPSIQ YRSPPPAASA AARRWRADRR RSWELEQFIG ECYRSGDLGP EDALDLFDEL LQRARPGSIY
101: ALNQLLTTVA RAPVSSSVRD GPALAVSMFN RMARAGAKKV APDIATFGIL ISCCCDAGCL NLGFAALGQI IKTGLRAQAV TFTPLLRTLC AEKRTSDAMN
201: IVLRRMPELG CTPDVFSYTT LLKGLCAEKK CEEAAELIHM MAEDGDNCPP NVVSYTTVIH GFFKEGDVGK AYTLFCKMLD HGIPPNVVTC NSVIDGLCKV
301: QAMDKAEAVL QQMIDEHIMP NCTTYNSLIH GYLSSGQWTE AVRILKEMSR DGQRPNVVTY SMLIDCLCKS GLHAEAREIF NSMIQSGQKP NASTYGSLLH
401: GYATEGNLVD MNNVKDLMVQ NGMRPGRHVF NIEIYAYCKC GRLDEASLTF NKMQQQGFMP DIVAYTTVID GLCKIGRLDD AMSRFCQMID DGLSPDIITF
501: NTLIHGFALH GKWEKAEELF YEMMDRGIPP NVNTFNSMID KLFKEGKVTE ARKLFDLMPR AGAKPNVVSY NTMIHGYFIA GEVGEVMKLL DDMLLIGLKP
601: TAVTFNTLLD GMVSMGLKPD VVTCKTLIDS CCEDGRIEDI LTLFREMLGK ADKTDTITEN IKL

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.