Factsheet for TraesCS6B01G021200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	91.69	78.63
TraesCS6A01G015000.1	Wheat	mitochondrion	86.15	67.47
HORVU1Hr1G018190.2	Barley	cytosol	44.92	51.23
Os10t0497432-01	Rice	mitochondrion	39.69	48.5
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	94.15	42.8
Os08t0107700-01	Rice	cytosol, mitochondrion	48.62	42.25
Os08t0248400-01	Rice	mitochondrion	53.54	39.55
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	86.77	39.44
TraesCS6B01G021600.1	Wheat	mitochondrion	84.31	38.27
Zm00001d018982_P001	Maize	mitochondrion	40.0	37.14
TraesCS1B01G315500.1	Wheat	mitochondrion	36.0	36.45
Os10t0495100-01	Rice	cytosol, mitochondrion	50.77	35.79
Os10t0499500-01	Rice	mitochondrion	54.46	34.98
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	43.38	32.56
OQU88594	Sorghum	cytosol	51.69	32.18
HORVU6Hr1G002890.6	Barley	cytosol, plastid	77.23	31.57
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	41.23	30.52
Os10t0497366-00	Rice	mitochondrion	35.08	28.43
TraesCS6B01G129100.1	Wheat	cytosol, plastid	24.92	28.12
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	43.69	28.12
TraesCS6B01G127500.1	Wheat	cytosol	42.15	27.96
EER95949	Sorghum	mitochondrion	56.92	27.9
TraesCS6B01G127200.1	Wheat	cytosol	28.92	27.33
TraesCS1B01G073200.1	Wheat	cytosol	24.62	26.4
TraesCS1B01G092600.1	Wheat	plastid	39.08	24.56
TraesCS1B01G072300.1	Wheat	plastid	42.77	24.47
Os08t0107800-01	Rice	mitochondrion	46.77	24.36
Solyc06g007280.2.1	Tomato	cytosol	18.15	23.14
KXG34536	Sorghum	mitochondrion	39.69	22.55
TraesCS2B01G126900.1	Wheat	cytosol	26.15	22.25
Os10t0495200-01	Rice	mitochondrion	52.62	21.87
Os10t0497300-01	Rice	mitochondrion	53.23	21.79
TraesCS1B01G038200.1	Wheat	mitochondrion	40.92	21.01
TraesCS1B01G086000.1	Wheat	plastid	44.0	20.85
Zm00001d009733_P001	Maize	cytosol	50.15	20.5
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	44.62	18.59
Os08t0110200-01	Rice	mitochondrion	44.92	18.3
TraesCS7B01G469500.1	Wheat	cytosol	31.08	17.97
KRH40513	Soybean	plastid	19.08	17.66
TraesCS1B01G085900.1	Wheat	mitochondrion	44.0	17.57
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	35.69	17.47
Os10t0501700-00	Rice	cytosol	24.31	17.4
TraesCS1B01G038500.1	Wheat	mitochondrion	42.15	17.34
TraesCS1B01G072700.1	Wheat	cytosol	27.08	17.25
TraesCS2B01G560700.1	Wheat	plastid	40.62	17.12
TraesCS1B01G071600.1	Wheat	mitochondrion	44.62	17.1
AT1G62914.1	Thale cress	mitochondrion	27.08	16.67
Zm00001d009735_P001	Maize	cytosol	49.85	16.65
TraesCS1B01G039200.1	Wheat	mitochondrion	40.0	16.58
KRH39050	Soybean	mitochondrion	26.77	16.35
TraesCS1B01G039100.1	Wheat	mitochondrion	39.38	16.35
TraesCS1B01G092500.1	Wheat	mitochondrion	39.08	16.22
TraesCS1B01G072400.1	Wheat	cytosol	34.46	16.12
TraesCS1B01G072900.2	Wheat	mitochondrion	43.08	16.04
TraesCS1B01G085300.1	Wheat	mitochondrion	39.08	16.04
AT1G62910.1	Thale cress	mitochondrion	29.85	15.35
VIT_12s0028g02320.t01	Wine grape	mitochondrion	22.46	15.3
AT1G63330.2	Thale cress	cytosol	25.85	15.03
AT1G63070.1	Thale cress	mitochondrion	27.08	14.92
AT1G63400.1	Thale cress	cytosol, plastid	26.46	14.9
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	24.0	14.86
AT1G62670.1	Thale cress	mitochondrion	28.62	14.76
Solyc06g007740.1.1	Tomato	cytosol	26.77	14.75
KRH09084	Soybean	plastid	23.08	14.68
AT1G62930.1	Thale cress	plastid	28.31	14.63
AT1G63150.1	Thale cress	mitochondrion	28.31	14.63
Bra036649.1-P	Field mustard	cytosol	17.54	14.58
Bra016762.1-P	Field mustard	mitochondrion	27.08	14.5
KRH31646	Soybean	cytosol	23.08	14.48
AT1G63130.1	Thale cress	mitochondrion	28.0	14.44
VIT_14s0030g02280.t01	Wine grape	plastid	24.92	14.44
KRH41817	Soybean	mitochondrion	24.62	14.41
AT1G63080.3	Thale cress	mitochondrion	27.08	14.33
Bra028267.1-P	Field mustard	mitochondrion	27.38	14.22
AT3G22470.1	Thale cress	cytosol, mitochondrion	27.08	14.22
PGSC0003DMT400053556	Potato	mitochondrion	20.0	14.16
AT1G06580.1	Thale cress	mitochondrion	21.54	14.0
Bra026971.1-P	Field mustard	mitochondrion	27.08	13.99
PGSC0003DMT400025074	Potato	cytosol	23.69	13.95
PGSC0003DMT400056663	Potato	plastid	25.23	13.95
PGSC0003DMT400056665	Potato	mitochondrion	25.23	13.92
AT1G62590.1	Thale cress	mitochondrion	27.08	13.88
Solyc06g007300.1.1	Tomato	extracellular	25.23	13.85
AT1G12620.1	Thale cress	cytosol, mitochondrion	26.46	13.85
Bra026954.1-P	Field mustard	mitochondrion	27.69	13.85
VIT_14s0081g00120.t01	Wine grape	plastid	24.62	13.72
AT1G12300.1	Thale cress	mitochondrion	26.77	13.66
Bra027658.1-P	Field mustard	cytosol, mitochondrion	22.77	13.63
VIT_14s0081g00270.t01	Wine grape	plastid	24.31	13.62
AT5G16640.1	Thale cress	mitochondrion	20.92	13.49
KRH08639	Soybean	mitochondrion, plastid	23.38	13.45
KRH17148	Soybean	mitochondrion	22.46	13.39
KRH09121	Soybean	mitochondrion	21.85	13.3
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.62	13.27
PGSC0003DMT400053185	Potato	mitochondrion	24.0	13.22
KRH08636	Soybean	cytosol	21.23	13.22
PGSC0003DMT400025087	Potato	endoplasmic reticulum	20.0	13.13
Bra026882.1-P	Field mustard	cytosol	21.54	13.11
KRH39004	Soybean	cytosol	20.0	13.08
KRH39054	Soybean	cytosol	20.0	13.08
KRH39057	Soybean	cytosol	20.0	13.08
Solyc06g005220.2.1	Tomato	cytosol	16.31	13.05
KRH08628	Soybean	plastid	22.15	13.04
Bra026958.1-P	Field mustard	mitochondrion	25.54	13.03
AT1G64580.1	Thale cress	mitochondrion	20.92	13.0
Bra036651.1-P	Field mustard	mitochondrion	21.23	12.9
AT1G12775.1	Thale cress	cytosol, mitochondrion	25.54	12.89
KRH48615	Soybean	mitochondrion	21.54	12.84
TraesCS1B01G038400.1	Wheat	cytosol	24.0	12.83
PGSC0003DMT400008760	Potato	mitochondrion	23.08	12.8
KRH08671	Soybean	cytosol, mitochondrion	21.54	12.66
KRH08607	Soybean	cytosol	21.85	12.66
PGSC0003DMT400008757	Potato	cytosol	19.38	12.65
TraesCS1B01G085400.1	Wheat	cytosol	24.92	12.64
VIT_14s0081g00110.t01	Wine grape	cytosol	19.08	12.63
Bra027026.1-P	Field mustard	mitochondrion	20.31	12.62
KRH09154	Soybean	mitochondrion	21.54	12.59
Solyc04g080120.1.1	Tomato	extracellular	23.69	12.58
KRH08277	Soybean	plastid	21.85	12.52
KRH39072	Soybean	cytosol	19.08	12.5
KRH39074	Soybean	cytosol	19.08	12.47
KRH39112	Soybean	cytosol	19.08	12.47
PGSC0003DMT400015293	Potato	mitochondrion	23.38	12.46
PGSC0003DMT400015298	Potato	mitochondrion	23.38	12.46
AT4G26800.2	Thale cress	mitochondrion, plastid	19.69	12.45
KRH39066	Soybean	cytosol	21.23	12.43
Bra031731.1-P	Field mustard	mitochondrion	19.38	12.4
AT1G62720.1	Thale cress	mitochondrion	18.46	12.37
VIT_14s0081g00280.t01	Wine grape	mitochondrion	24.31	12.36
PGSC0003DMT400025067	Potato	cytosol	17.85	12.18
KRH40400	Soybean	plastid	21.54	12.13
Bra021192.1-P	Field mustard	plastid	18.77	12.1
Bra026884.1-P	Field mustard	cytosol	16.92	11.98
KRH08625	Soybean	plastid	21.23	11.98
PGSC0003DMT400052971	Potato	mitochondrion	21.85	11.97
KRH09095	Soybean	plastid	21.54	11.97
AT1G64583.1	Thale cress	mitochondrion	18.77	11.91
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.23	11.74
AT1G12700.2	Thale cress	cytosol	22.15	11.65
AT3G16710.1	Thale cress	mitochondrion	18.15	11.64
PGSC0003DMT400053182	Potato	cytosol	21.23	11.52
TraesCS1B01G039700.1	Wheat	cytosol	21.54	11.51
KRH09097	Soybean	plastid	20.62	11.49
KRH25652	Soybean	cytosol, golgi	19.08	11.48
AT1G62680.2	Thale cress	plastid	19.08	11.31
Bra026957.1-P	Field mustard	mitochondrion	20.92	11.28
AT5G41170.1	Thale cress	mitochondrion	18.15	11.2
Bra026401.1-P	Field mustard	plastid	17.85	10.84
TraesCS1B01G073100.1	Wheat	cytosol	20.0	10.73
KRH08599	Soybean	cytosol, plastid	21.23	10.31
AT1G64100.2	Thale cress	cytosol	25.54	10.3
TraesCS1B01G075300.1	Wheat	cytosol	18.77	10.22
TraesCS1B01G038300.1	Wheat	plastid	16.92	10.07
KRH09082	Soybean	cytosol	12.62	10.05
PGSC0003DMT400052977	Potato	cytosol	12.0	10.03
Bra027726.1-P	Field mustard	mitochondrion	14.46	9.98
TraesCS2B01G559900.1	Wheat	cytosol	16.62	9.96
Bra027636.1-P	Field mustard	cytosol	9.54	9.57
TraesCS2B01G560300.1	Wheat	cytosol	16.62	9.49
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.15	9.37
KRH09085	Soybean	mitochondrion	20.0	9.23
Bra027656.1-P	Field mustard	cytosol	25.85	8.93
KRH12873	Soybean	cytosol	18.15	8.48
Bra027029.1-P	Field mustard	mitochondrion	6.15	8.23
OQU88581	Sorghum	cytosol	27.38	8.19
Bra016758.1-P	Field mustard	plastid	27.08	7.59
KRH39064	Soybean	cytosol	21.54	7.22
Bra006187.1-P	Field mustard	plastid	3.69	4.12
TraesCS6B01G114300.1	Wheat	cytosol	4.92	4.11
VIT_14s0030g02260.t01	Wine grape	cytosol	5.23	3.84
PGSC0003DMT400008759	Potato	cytosol	3.69	3.76
TraesCS1B01G084800.1	Wheat	cytosol	0.62	0.43
TraesCS6B01G341800.2	Wheat	cytosol	0.31	0.25
CDX68679	Canola	cytosol	0.0	0.0
Solyc06g007810.1.1	Tomato	cytosol	0.0	0.0
TraesCS1B01G038600.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6B01G021200.1	EnsemblPlantsGene:TraesCS6B01G021200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr6B:+:12886585..12888528

Molecular Weight (calculated)

36302.4 Da

IEP (calculated)

7.055

GRAVY (calculated)

0.046

Length

325 amino acids

Sequence
(BLAST)

001: MSRRFVPVDR RILERNIKAR YHAGDIGTED ALNLFDELIQ VAGPSSVRAI NCLLTVVGSD CPALGVSLFN RVARTKVPPH NVTYGILVDC CCRAGRLDLG
101: HAAMGHVIKL GFTAEAIVNF SHLLKAICAE KKTSYAMDIV LRIMPEFNCV PNIFSYNILF KGLCNEKRSQ EALELIQIMV EDGGCCRPDV VTYSTVIDGL
201: LKEGEVDQAY RLFSEMLRQG VSPNIVTCNS IISGMCKLHA MDKAEEVLQQ MLDRRILPDV TTYTSLIHGY YSLGQCEEVD RVFKEMPRNG VQPNIITYSI
301: QMDYLCKNGR CTEARKIFDS MISLG

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.