Factsheet for TraesCS1B01G038500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G033000.1	Wheat	cytosol	45.7	89.36
TraesCS1B01G039200.1	Wheat	mitochondrion	85.82	86.48
TraesCS1B01G038400.1	Wheat	cytosol	65.19	84.7
TraesCS1B01G038300.1	Wheat	plastid	58.23	84.25
TraesCS1B01G039700.1	Wheat	cytosol	64.3	83.55
TraesCS2B01G126900.1	Wheat	cytosol	40.25	83.25
TraesCS1B01G038600.1	Wheat	cytosol	38.23	83.2
TraesCS1B01G038200.1	Wheat	mitochondrion	65.44	81.67
TraesCS1A01G031700.1	Wheat	plastid	76.46	81.51
TraesCS1B01G039100.1	Wheat	mitochondrion	80.38	81.1
HORVU1Hr1G004750.6	Barley	plastid	79.37	78.57
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	68.99	77.97
TraesCS1B01G315500.1	Wheat	mitochondrion	30.76	75.7
TraesCS1B01G075300.1	Wheat	cytosol	46.46	61.47
TraesCS1B01G084800.1	Wheat	cytosol	35.82	60.99
TraesCS6B01G341800.2	Wheat	cytosol	30.76	60.9
TraesCS1B01G085400.1	Wheat	cytosol	48.99	60.37
TraesCS1B01G092500.1	Wheat	mitochondrion	59.62	60.15
TraesCS1B01G073100.1	Wheat	cytosol	45.44	59.24
TraesCS1B01G085900.1	Wheat	mitochondrion	60.63	58.85
TraesCS1B01G072400.1	Wheat	cytosol	51.14	58.13
KXG28799	Sorghum	plastid	55.19	57.37
TraesCS1B01G085300.1	Wheat	mitochondrion	57.34	57.2
Zm00001d007534_P001	Maize	plastid	56.2	57.14
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	55.06	55.77
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	30.89	55.58
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	46.71	55.57
TraesCS2B01G559900.1	Wheat	cytosol	38.1	55.54
KXG35774	Sorghum	cytosol, mitochondrion	33.04	55.18
TraesCS2B01G560300.1	Wheat	cytosol	39.62	55.01
TraesCS2B01G560700.1	Wheat	plastid	53.67	54.99
Zm00001d007531_P001	Maize	plastid	56.33	54.67
TraesCS1B01G072900.2	Wheat	mitochondrion	60.38	54.64
Zm00001d007548_P001	Maize	plastid	56.08	54.42
Zm00001d007555_P001	Maize	plastid	55.95	54.3
TraesCS7B01G469500.1	Wheat	cytosol	38.61	54.27
Zm00001d007559_P001	Maize	plastid	56.08	54.22
TraesCS1B01G092600.1	Wheat	plastid	35.19	53.77
TraesCS1B01G071600.1	Wheat	mitochondrion	57.47	53.54
TraesCS1B01G086000.1	Wheat	plastid	46.33	53.35
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	51.65	53.26
TraesCS1B01G072300.1	Wheat	plastid	37.97	52.82
TraesCS1B01G073200.1	Wheat	cytosol	19.87	51.82
TraesCS6B01G127200.1	Wheat	cytosol	22.28	51.16
TraesCS1B01G072700.1	Wheat	cytosol	32.66	50.59
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	32.28	50.49
TraesCS6B01G127500.1	Wheat	cytosol	31.27	50.41
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	26.58	48.5
TraesCS6B01G021600.1	Wheat	mitochondrion	41.14	45.39
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	40.89	45.17
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	40.76	45.03
Os04t0351333-00	Rice	cytosol	50.0	44.94
Os04t0349600-01	Rice	plastid	21.9	44.7
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	17.34	42.15
TraesCS6B01G114300.1	Wheat	cytosol	20.13	40.87
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	19.37	40.37
TraesCS6B01G129100.1	Wheat	cytosol, plastid	12.53	34.38
Solyc06g007280.2.1	Tomato	cytosol	10.76	33.33
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.87	32.91
KRH39004	Soybean	cytosol	20.0	31.79
KRH39054	Soybean	cytosol	20.0	31.79
KRH39074	Soybean	cytosol	20.0	31.79
VIT_14s0081g00110.t01	Wine grape	cytosol	19.62	31.57
KRH39072	Soybean	cytosol	19.62	31.25
KRH39057	Soybean	cytosol	19.62	31.19
KRH39112	Soybean	cytosol	19.62	31.19
PGSC0003DMT400052977	Potato	cytosol	15.06	30.59
Solyc06g005220.2.1	Tomato	cytosol	15.57	30.3
Bra027636.1-P	Field mustard	cytosol	12.41	30.25
VIT_14s0081g00120.t01	Wine grape	plastid	22.03	29.85
KRH09084	Soybean	plastid	19.24	29.75
Bra036649.1-P	Field mustard	cytosol	14.68	29.67
AT5G16640.1	Thale cress	mitochondrion	18.86	29.56
KRH48615	Soybean	mitochondrion	20.13	29.17
VIT_14s0081g00270.t01	Wine grape	plastid	21.39	29.14
KRH39066	Soybean	cytosol	20.38	29.01
KRH17148	Soybean	mitochondrion	20.0	28.99
KRH40513	Soybean	plastid	12.78	28.77
KRH31646	Soybean	cytosol	18.73	28.57
KRH39050	Soybean	mitochondrion	18.99	28.2
Bra006187.1-P	Field mustard	plastid	10.38	28.18
KRH08636	Soybean	cytosol	18.61	28.16
KRH08639	Soybean	mitochondrion, plastid	20.13	28.14
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	17.97	28.12
KRH41817	Soybean	mitochondrion	19.75	28.11
AT1G63330.2	Thale cress	cytosol	19.75	27.91
PGSC0003DMT400008759	Potato	cytosol	11.27	27.9
KRH08277	Soybean	plastid	20.0	27.87
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.41	27.7
KRH09154	Soybean	mitochondrion	19.49	27.7
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.35	27.62
Solyc06g007810.1.1	Tomato	cytosol	9.37	27.61
KRH08628	Soybean	plastid	19.24	27.54
PGSC0003DMT400008757	Potato	cytosol	17.34	27.51
PGSC0003DMT400025074	Potato	cytosol	19.11	27.36
KRH08671	Soybean	cytosol, mitochondrion	19.11	27.31
Solyc06g007740.1.1	Tomato	cytosol	20.25	27.12
KRH40400	Soybean	plastid	19.75	27.04
Bra021192.1-P	Field mustard	plastid	17.22	26.98
CDX68679	Canola	cytosol	3.92	26.96
Solyc06g007300.1.1	Tomato	extracellular	20.0	26.69
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.71	26.67
AT3G16710.1	Thale cress	mitochondrion	17.09	26.63
KRH09121	Soybean	mitochondrion	17.97	26.59
Bra026884.1-P	Field mustard	cytosol	15.44	26.58
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.89	26.57
AT1G64583.1	Thale cress	mitochondrion	17.22	26.56
KRH08625	Soybean	plastid	19.37	26.56
VIT_14s0030g02280.t01	Wine grape	plastid	18.86	26.56
AT1G62720.1	Thale cress	mitochondrion	16.2	26.39
AT1G64580.1	Thale cress	mitochondrion	17.47	26.39
Bra027029.1-P	Field mustard	mitochondrion	8.1	26.34
AT1G62914.1	Thale cress	mitochondrion	17.59	26.33
KRH09082	Soybean	cytosol	13.54	26.23
AT1G63080.3	Thale cress	mitochondrion	20.38	26.22
AT1G63400.1	Thale cress	cytosol, plastid	19.11	26.17
PGSC0003DMT400053185	Potato	mitochondrion	19.49	26.1
PGSC0003DMT400025067	Potato	cytosol	15.7	26.05
Bra026882.1-P	Field mustard	cytosol	17.59	26.03
PGSC0003DMT400056663	Potato	plastid	19.24	25.85
PGSC0003DMT400052971	Potato	mitochondrion	19.37	25.8
AT1G06580.1	Thale cress	mitochondrion	16.33	25.8
Bra036651.1-P	Field mustard	mitochondrion	17.47	25.79
AT1G62670.1	Thale cress	mitochondrion	20.51	25.71
AT1G63130.1	Thale cress	mitochondrion	20.51	25.71
KRH08607	Soybean	cytosol	18.23	25.67
PGSC0003DMT400056665	Potato	mitochondrion	19.11	25.64
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.44	25.58
AT1G63150.1	Thale cress	mitochondrion	20.25	25.44
AT1G63070.1	Thale cress	mitochondrion	18.99	25.42
KRH25652	Soybean	cytosol, golgi	17.34	25.37
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.87	25.36
Solyc04g080120.1.1	Tomato	extracellular	19.49	25.16
AT1G62910.1	Thale cress	mitochondrion	20.13	25.16
AT1G62930.1	Thale cress	plastid	20.0	25.12
PGSC0003DMT400008760	Potato	mitochondrion	18.61	25.09
AT1G62590.1	Thale cress	mitochondrion	20.0	24.92
AT1G12700.2	Thale cress	cytosol	19.49	24.92
Bra027726.1-P	Field mustard	mitochondrion	14.81	24.84
PGSC0003DMT400053556	Potato	mitochondrion	14.43	24.84
Bra031731.1-P	Field mustard	mitochondrion	15.95	24.8
PGSC0003DMT400015293	Potato	mitochondrion	19.11	24.75
PGSC0003DMT400015298	Potato	mitochondrion	19.11	24.75
KRH09097	Soybean	plastid	18.23	24.7
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.13	24.69
AT5G41170.1	Thale cress	mitochondrion	16.46	24.67
AT1G12300.1	Thale cress	mitochondrion	19.87	24.65
Bra026971.1-P	Field mustard	mitochondrion	19.62	24.64
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.84	24.49
Bra027026.1-P	Field mustard	mitochondrion	16.2	24.47
AT1G62680.2	Thale cress	plastid	16.96	24.45
KRH09095	Soybean	plastid	18.1	24.44
PGSC0003DMT400053182	Potato	cytosol	18.48	24.37
Bra028267.1-P	Field mustard	mitochondrion	19.24	24.28
Bra016762.1-P	Field mustard	mitochondrion	18.35	23.89
Bra026957.1-P	Field mustard	mitochondrion	18.23	23.88
Bra026954.1-P	Field mustard	mitochondrion	19.49	23.69
Bra026958.1-P	Field mustard	mitochondrion	18.99	23.55
AT4G26800.2	Thale cress	mitochondrion, plastid	15.32	23.54
Bra026401.1-P	Field mustard	plastid	15.7	23.18
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.05	22.61
VIT_14s0030g02260.t01	Wine grape	cytosol	12.66	22.57
KRH08599	Soybean	cytosol, plastid	18.23	21.52
KRH09085	Soybean	mitochondrion	19.11	21.45
AT1G64100.2	Thale cress	cytosol	21.77	21.34
KRH12873	Soybean	cytosol	17.22	19.54
Bra027656.1-P	Field mustard	cytosol	22.28	18.7
KRH39064	Soybean	cytosol	22.41	18.27
Bra016758.1-P	Field mustard	plastid	19.62	13.37

Protein Annotations

EnsemblPlants:TraesCS1B01G038500.1	EnsemblPlantsGene:TraesCS1B01G038500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF3
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:18116277..18118649

Molecular Weight (calculated)

87791.4 Da

IEP (calculated)

8.664

GRAVY (calculated)

0.018

Length

790 amino acids

Sequence
(BLAST)

001: MPRFSSTTPM SPPRLRLRLR LCARHSSSTS HPSRIWDPHA AFAAAAQRAS SGTLTTEDAH HLFDELLRRG NPVQERPLNK FLAALARAPA SASCCDGPAL
101: AVTLFGRLSR DVGRRVAQPN VFTYGVLMDC CCRACRTDLV LAFFGRLLKT GLEANQVVFN TLLKGLCHTK RADEALDVLL HRMPELGCTP NVVAYNTVIH
201: GFFKEGHVSK ACNLFHEMAQ QGVKPNVVTY NSVIDALCKA RAMDKAEVVL RQMIDDGVGP DNVTYSSLIH GYSSSGHWKE AVRVFKEMTS RRVTADVHTY
301: NMFMTFLCKH GRSKEAAGIF DTMAIKGLKP DNVSYAIRLH GYATEGCLVD MINLFNSMAT HCILPNCHIF NILINAYAKS GKLDKAMLIF NEMQKQGVSP
401: NAVTYSTVIH AFCKKGRLDD AVIKFNQMID TGVRPDASVY RPLIQGFCTH GDLVKAKEYV TEMMKKGMPP PDIMFFSSIM QNLCTEGRVT EARDILDLIV
501: HIGMRPNVII FNLLIGGYCL VRKMADALKV FDDMVSYGLE PCNFTYGILI NGYCKNRRID DGLILFKEML HKGLKPTTFN YNVILDGLFL AGQTVAAKEK
601: FDEMVESGVS VCIDTYSIIL GGLCRNSCSS EAITLFRKLS AMNVKFDITI VNIIIGALYR VERNQEAKDL FAAMPANGLV PNAVTYTVMM TNLIKEGSVE
701: EADNLFLSME KSGCTANSCL LNHIIRRLLE KGEIVKAGNY MSKVDAKSYS LEAKTVSLLI SLFSRKGKYR EHIKLLPTKY QFLEEAATVE

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.