Factsheet for TraesCS1B01G072900.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G054800.1	Wheat	cytosol	53.95	80.93
TraesCS1B01G072400.1	Wheat	cytosol	63.57	79.86
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	66.67	74.62
TraesCS1B01G073100.1	Wheat	cytosol	51.78	74.59
TraesCS1B01G092500.1	Wheat	mitochondrion	65.86	73.44
TraesCS1B01G072300.1	Wheat	plastid	47.19	72.54
TraesCS1B01G075300.1	Wheat	cytosol	48.68	71.19
TraesCS1B01G073200.1	Wheat	cytosol	24.28	69.97
TraesCS1B01G071600.1	Wheat	mitochondrion	67.93	69.93
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	52.81	69.43
TraesCS1B01G085900.1	Wheat	mitochondrion	64.6	69.29
TraesCS6B01G341800.2	Wheat	cytosol	30.7	67.17
TraesCS1B01G084800.1	Wheat	cytosol	35.51	66.81
TraesCS1B01G072700.1	Wheat	cytosol	38.95	66.67
TraesCS1B01G086000.1	Wheat	plastid	51.66	65.74
TraesCS1B01G085300.1	Wheat	mitochondrion	59.56	65.66
TraesCS1B01G085400.1	Wheat	cytosol	48.0	65.37
TraesCS1B01G092600.1	Wheat	plastid	38.26	64.6
TraesCS1B01G039200.1	Wheat	mitochondrion	54.3	60.46
TraesCS1B01G315500.1	Wheat	mitochondrion	22.22	60.44
TraesCS1B01G038500.1	Wheat	mitochondrion	54.64	60.38
TraesCS1B01G039100.1	Wheat	mitochondrion	54.07	60.28
TraesCS1B01G038300.1	Wheat	plastid	37.57	60.07
TraesCS1B01G038400.1	Wheat	cytosol	41.58	59.7
TraesCS2B01G126900.1	Wheat	cytosol	26.12	59.69
TraesCS1B01G039700.1	Wheat	cytosol	41.24	59.21
TraesCS1B01G038600.1	Wheat	cytosol	24.4	58.68
TraesCS1B01G038200.1	Wheat	mitochondrion	41.92	57.82
TraesCS2B01G560700.1	Wheat	plastid	50.4	57.07
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	28.52	56.72
KXG28799	Sorghum	plastid	49.03	56.32
Zm00001d007555_P001	Maize	plastid	51.55	55.28
TraesCS2B01G560300.1	Wheat	cytosol	35.97	55.18
TraesCS2B01G559900.1	Wheat	cytosol	34.25	55.17
Zm00001d007534_P001	Maize	plastid	49.03	55.08
Zm00001d007548_P001	Maize	plastid	51.09	54.79
Zm00001d007531_P001	Maize	plastid	50.97	54.67
TraesCS7B01G469500.1	Wheat	cytosol	35.17	54.63
Zm00001d007559_P001	Maize	plastid	51.09	54.59
TraesCS6B01G127200.1	Wheat	cytosol	21.19	53.78
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	46.28	52.74
KXG35774	Sorghum	cytosol, mitochondrion	28.29	52.22
TraesCS6B01G127500.1	Wheat	cytosol	28.87	51.43
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	25.43	51.27
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	29.1	50.3
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	38.03	46.43
TraesCS6B01G021600.1	Wheat	mitochondrion	37.57	45.81
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	37.23	45.45
Os04t0349600-01	Rice	plastid	19.93	44.96
Os04t0351333-00	Rice	cytosol	45.13	44.82
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	16.04	43.08
TraesCS6B01G114300.1	Wheat	cytosol	18.67	41.9
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	17.3	39.84
TraesCS6B01G129100.1	Wheat	cytosol, plastid	13.06	39.58
Solyc06g007280.2.1	Tomato	cytosol	10.19	34.9
KRH39004	Soybean	cytosol	19.01	33.4
KRH39054	Soybean	cytosol	18.9	33.2
KRH39112	Soybean	cytosol	18.79	33.0
KRH39057	Soybean	cytosol	18.56	32.6
KRH39074	Soybean	cytosol	18.44	32.39
KRH39072	Soybean	cytosol	18.1	31.85
Bra027636.1-P	Field mustard	cytosol	11.34	30.56
VIT_14s0081g00110.t01	Wine grape	cytosol	17.18	30.55
VIT_12s0028g02320.t01	Wine grape	mitochondrion	16.61	30.4
KRH09084	Soybean	plastid	17.75	30.33
KRH39066	Soybean	cytosol	19.24	30.27
PGSC0003DMT400052977	Potato	cytosol	13.4	30.08
Solyc06g005220.2.1	Tomato	cytosol	13.86	29.8
KRH08636	Soybean	cytosol	17.75	29.69
KRH09154	Soybean	mitochondrion	18.9	29.68
KRH40513	Soybean	plastid	11.91	29.63
AT1G63330.2	Thale cress	cytosol	18.9	29.52
Bra026884.1-P	Field mustard	cytosol	15.35	29.19
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	16.84	29.11
KRH48615	Soybean	mitochondrion	18.1	28.99
VIT_14s0081g00120.t01	Wine grape	plastid	19.24	28.82
KRH17148	Soybean	mitochondrion	17.98	28.81
AT5G16640.1	Thale cress	mitochondrion	16.61	28.77
KRH08639	Soybean	mitochondrion, plastid	18.44	28.5
AT1G62930.1	Thale cress	plastid	20.5	28.46
KRH08628	Soybean	plastid	17.98	28.44
AT1G63130.1	Thale cress	mitochondrion	20.5	28.41
Solyc06g007810.1.1	Tomato	cytosol	8.71	28.36
KRH08671	Soybean	cytosol, mitochondrion	17.87	28.21
Bra036649.1-P	Field mustard	cytosol	12.6	28.13
Bra026882.1-P	Field mustard	cytosol	17.18	28.09
KRH08277	Soybean	plastid	18.21	28.04
Bra021192.1-P	Field mustard	plastid	16.15	27.98
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.82	27.95
VIT_14s0081g00270.t01	Wine grape	plastid	18.56	27.93
Bra006187.1-P	Field mustard	plastid	9.28	27.84
AT1G62670.1	Thale cress	mitochondrion	20.05	27.78
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	16.61	27.62
PGSC0003DMT400008759	Potato	cytosol	10.08	27.59
AT1G63400.1	Thale cress	cytosol, plastid	18.21	27.56
AT1G63080.3	Thale cress	mitochondrion	19.24	27.36
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.16	27.33
Bra036651.1-P	Field mustard	mitochondrion	16.72	27.29
PGSC0003DMT400053185	Potato	mitochondrion	18.44	27.29
AT1G62590.1	Thale cress	mitochondrion	19.82	27.29
KRH08607	Soybean	cytosol	17.53	27.27
KRH08625	Soybean	plastid	17.98	27.26
Bra026971.1-P	Field mustard	mitochondrion	19.59	27.19
Bra016762.1-P	Field mustard	mitochondrion	18.9	27.18
PGSC0003DMT400025074	Potato	cytosol	17.18	27.17
KRH09121	Soybean	mitochondrion	16.61	27.15
AT1G63070.1	Thale cress	mitochondrion	18.33	27.12
Solyc06g007740.1.1	Tomato	cytosol	18.33	27.12
PGSC0003DMT400008757	Potato	cytosol	15.46	27.11
AT1G63150.1	Thale cress	mitochondrion	19.47	27.03
Bra026958.1-P	Field mustard	mitochondrion	19.7	27.0
Bra031731.1-P	Field mustard	mitochondrion	15.69	26.97
CDX68679	Canola	cytosol	3.55	26.96
AT1G62910.1	Thale cress	mitochondrion	19.47	26.9
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.13	26.89
KRH39050	Soybean	mitochondrion	16.38	26.88
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.23	26.87
KRH40400	Soybean	plastid	17.75	26.86
AT1G12300.1	Thale cress	mitochondrion	19.59	26.84
AT3G16710.1	Thale cress	mitochondrion	15.58	26.82
Bra027029.1-P	Field mustard	mitochondrion	7.45	26.75
PGSC0003DMT400025067	Potato	cytosol	14.55	26.68
AT1G62680.2	Thale cress	plastid	16.72	26.64
Bra026954.1-P	Field mustard	mitochondrion	19.82	26.62
VIT_14s0030g02280.t01	Wine grape	plastid	17.07	26.56
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.49	26.52
Bra028267.1-P	Field mustard	mitochondrion	19.01	26.52
AT1G62914.1	Thale cress	mitochondrion	16.04	26.52
KRH25652	Soybean	cytosol, golgi	16.38	26.48
Bra025516.1-P	Field mustard	cytosol, mitochondrion	14.43	26.42
PGSC0003DMT400056663	Potato	plastid	17.75	26.36
Solyc06g007300.1.1	Tomato	extracellular	17.87	26.35
KRH09082	Soybean	cytosol	12.26	26.23
AT1G64580.1	Thale cress	mitochondrion	15.69	26.2
PGSC0003DMT400056665	Potato	mitochondrion	17.64	26.15
AT1G62720.1	Thale cress	mitochondrion	14.43	25.98
PGSC0003DMT400008760	Potato	mitochondrion	17.41	25.94
Bra027026.1-P	Field mustard	mitochondrion	15.46	25.81
AT1G64583.1	Thale cress	mitochondrion	15.12	25.78
KRH41817	Soybean	mitochondrion	16.38	25.77
AT1G12700.2	Thale cress	cytosol	18.21	25.73
KRH31646	Soybean	cytosol	15.23	25.68
KRH09097	Soybean	plastid	17.07	25.56
VIT_14s0081g00280.t01	Wine grape	mitochondrion	18.67	25.51
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.2	25.25
Bra026957.1-P	Field mustard	mitochondrion	17.41	25.21
KRH09095	Soybean	plastid	16.84	25.13
PGSC0003DMT400052971	Potato	mitochondrion	17.07	25.13
AT5G41170.1	Thale cress	mitochondrion	15.01	24.86
PGSC0003DMT400053182	Potato	cytosol	16.95	24.71
Solyc04g080120.1.1	Tomato	extracellular	17.3	24.67
PGSC0003DMT400015293	Potato	mitochondrion	17.07	24.43
PGSC0003DMT400015298	Potato	mitochondrion	17.07	24.43
AT1G06580.1	Thale cress	mitochondrion	13.97	24.4
PGSC0003DMT400053556	Potato	mitochondrion	12.71	24.18
Bra026401.1-P	Field mustard	plastid	14.2	23.18
AT4G26800.2	Thale cress	mitochondrion, plastid	13.63	23.15
KRH08599	Soybean	cytosol, plastid	17.41	22.72
Bra027726.1-P	Field mustard	mitochondrion	12.14	22.51
AT1G64100.2	Thale cress	cytosol	20.73	22.46
VIT_14s0030g02260.t01	Wine grape	cytosol	11.23	22.12
KRH09085	Soybean	mitochondrion	16.95	21.02
Bra027656.1-P	Field mustard	cytosol	21.42	19.87
KRH12873	Soybean	cytosol	14.78	18.53
KRH39064	Soybean	cytosol	20.5	18.47
Bra016758.1-P	Field mustard	plastid	19.36	14.58

Protein Annotations

EnsemblPlants:TraesCS1B01G072900.2	EnsemblPlantsGene:TraesCS1B01G072900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:57130046..57132667

Molecular Weight (calculated)

96314.9 Da

IEP (calculated)

8.884

GRAVY (calculated)

0.002

Length

873 amino acids

Sequence
(BLAST)

001: MSRRIRLRRA LLLRLKSGLR HSFTSPFSRL RIRLRRYSTA PMSRLRLRLP RGSSSPTTLI PRLRLLRRCS TSTSTSSPSR SWSPRDAFAA ATERVRAGTL
101: SLEDAHKLFD ELLGQATPVP ERSLNGFLAA LARAPASGAC IRDGPALAVA LFNRVCREEA GAQVAALTVC TYNILMDCCC RARRPDLGLA LFGCFLRKGL
201: KTDQTGANTF LKCLCYAKRT DEAVNVLLHR MSELGCVPNA VSYNTVLKGL CDNSMSQRAL NLLQMVAGKG GGCFPDVVAY STVIHGFFKE GETGKACSLF
301: HEMMQQGIVP SVVTYNSIID ALCKVREVDK AELVLRQMVA KGAQPDTVTY NCMINGYATS GRLKEAAKMF REMKSRGLTP NVVTCNSFLA SLCKHRSSKE
401: AAEFFDSMTA KGQKPDIISY CTLLHGHARE GCFTDMIDLF NSMKSNGIAA DCHVFTILID TYAKRGMMDD AMHIFTEMQQ QGVSPNVVTY STVISALSRM
501: GRLTDAMEKF NQMVALGVQP DRAIYQSLIQ GFCMHGGLVK AKELVSQMIN KGIPHPNIVF FNSVINSMCK EGRVMDAHDI FDLVIDIGDR PDDTSFNSLI
601: DGYCLVGKMD KAFGMLNAME SVGVEPDIVT YSTLVNGYCR NGRIDDGLTL FREMMCKGVK PTTVTYGIIL DGLFHSGRTV AAMKMFHQMI ESGTTVTIST
701: YSIILGGLCR NNCADEAIVL FQKLGAMNVK FSITILNTMI NAMYKVQRKE EAKELFGTIS ASGLVPNECT YGVMIKNLLE EGSVEEADNM FSFMDRSGIV
801: PSSRLMNDII RMLLEKGEIA KAGYYLSKVD GKSISLEAST TSLMFSLFSR KSKYQEDMKL LPAKYQIFDG LVV

Best Arabidopsis Sequence Match ( AT1G62590.1 )
(BLAST)

001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.