Factsheet for TraesCS1B01G039700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G038600.1	Wheat	cytosol	49.34	82.64
TraesCS1B01G038400.1	Wheat	cytosol	82.07	82.07
TraesCS1A01G031600.1	Wheat	cytosol	88.49	81.27
TraesCS2B01G126900.1	Wheat	cytosol	48.36	76.96
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	83.22	72.39
TraesCS1B01G039200.1	Wheat	mitochondrion	83.39	64.67
TraesCS1B01G038500.1	Wheat	mitochondrion	83.55	64.3
HORVU1Hr1G004750.6	Barley	plastid	83.22	63.41
TraesCS1B01G039100.1	Wheat	mitochondrion	80.92	62.84
TraesCS1B01G075300.1	Wheat	cytosol	59.54	60.64
TraesCS6B01G341800.2	Wheat	cytosol	39.31	59.9
TraesCS1B01G073100.1	Wheat	cytosol	58.55	58.75
TraesCS1B01G038300.1	Wheat	plastid	52.47	58.42
TraesCS1B01G084800.1	Wheat	cytosol	44.24	57.97
TraesCS1B01G085400.1	Wheat	cytosol	60.53	57.41
TraesCS2B01G559900.1	Wheat	cytosol	50.16	56.27
TraesCS2B01G560300.1	Wheat	cytosol	52.63	56.24
TraesCS1B01G038200.1	Wheat	mitochondrion	58.39	56.08
TraesCS1B01G072400.1	Wheat	cytosol	61.02	53.38
KXG35774	Sorghum	cytosol, mitochondrion	40.79	52.43
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	54.28	49.7
TraesCS1B01G072700.1	Wheat	cytosol	40.95	48.82
TraesCS1B01G085300.1	Wheat	mitochondrion	61.18	46.97
TraesCS7B01G469500.1	Wheat	cytosol	43.26	46.8
TraesCS1B01G085900.1	Wheat	mitochondrion	61.51	45.95
TraesCS6B01G127200.1	Wheat	cytosol	25.99	45.93
Zm00001d007534_P001	Maize	plastid	58.06	45.43
KXG28799	Sorghum	plastid	56.25	45.0
TraesCS1B01G092500.1	Wheat	mitochondrion	57.57	44.7
Zm00001d007531_P001	Maize	plastid	58.55	43.73
Zm00001d007548_P001	Maize	plastid	58.06	43.37
Zm00001d007559_P001	Maize	plastid	57.89	43.08
Zm00001d007555_P001	Maize	plastid	57.57	43.0
TraesCS2B01G560700.1	Wheat	plastid	54.44	42.93
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	54.28	42.31
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	53.12	42.17
TraesCS1B01G072900.2	Wheat	mitochondrion	59.21	41.24
TraesCS6B01G114300.1	Wheat	cytosol	25.99	40.62
TraesCS1B01G071600.1	Wheat	mitochondrion	55.59	39.86
TraesCS1B01G073200.1	Wheat	cytosol	19.41	38.94
Os04t0351333-00	Rice	cytosol	56.09	38.79
TraesCS1B01G086000.1	Wheat	plastid	43.75	38.78
TraesCS6B01G021600.1	Wheat	mitochondrion	43.26	36.73
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	41.78	35.52
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	41.12	34.97
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	28.62	34.46
TraesCS1B01G092600.1	Wheat	plastid	28.29	33.27
TraesCS1B01G072300.1	Wheat	plastid	30.76	32.92
TraesCS6B01G127500.1	Wheat	cytosol	26.32	32.65
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	23.03	31.89
Bra027636.1-P	Field mustard	cytosol	16.28	30.56
TraesCS1B01G315500.1	Wheat	mitochondrion	16.12	30.53
Solyc06g007280.2.1	Tomato	cytosol	12.5	29.8
VIT_14s0081g00110.t01	Wine grape	cytosol	24.01	29.74
PGSC0003DMT400052977	Potato	cytosol	18.91	29.56
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	21.05	29.56
Solyc06g005220.2.1	Tomato	cytosol	19.08	28.57
PGSC0003DMT400008759	Potato	cytosol	14.8	28.21
Solyc06g007810.1.1	Tomato	cytosol	12.17	27.61
Bra027029.1-P	Field mustard	mitochondrion	11.02	27.57
Os04t0349600-01	Rice	plastid	17.43	27.39
Bra026884.1-P	Field mustard	cytosol	20.39	27.02
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.72	26.42
Bra006187.1-P	Field mustard	plastid	12.5	26.12
CDX68679	Canola	cytosol	4.93	26.09
KRH09082	Soybean	cytosol	17.43	25.98
KRH39004	Soybean	cytosol	21.22	25.96
KRH39054	Soybean	cytosol	21.05	25.75
KRH39112	Soybean	cytosol	21.05	25.75
KRH39072	Soybean	cytosol	20.72	25.4
KRH39057	Soybean	cytosol	20.72	25.35
KRH39074	Soybean	cytosol	20.56	25.15
Bra036649.1-P	Field mustard	cytosol	16.12	25.06
PGSC0003DMT400025067	Potato	cytosol	18.42	23.53
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.41	23.37
KRH48615	Soybean	mitochondrion	20.89	23.3
PGSC0003DMT400008757	Potato	cytosol	19.08	23.29
VIT_14s0030g02260.t01	Wine grape	cytosol	16.94	23.25
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.91	23.23
KRH40513	Soybean	plastid	13.32	23.08
KRH39066	Soybean	cytosol	20.89	22.88
VIT_14s0081g00120.t01	Wine grape	plastid	21.88	22.81
KRH08636	Soybean	cytosol	19.57	22.8
AT5G16640.1	Thale cress	mitochondrion	18.75	22.62
KRH08671	Soybean	cytosol, mitochondrion	20.56	22.6
VIT_14s0081g00270.t01	Wine grape	plastid	21.55	22.59
KRH09084	Soybean	plastid	18.91	22.5
Bra026882.1-P	Field mustard	cytosol	19.74	22.47
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	13.98	22.43
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.36	22.22
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.08	22.1
AT1G63330.2	Thale cress	cytosol	20.23	22.0
KRH08639	Soybean	mitochondrion, plastid	20.39	21.95
KRH25652	Soybean	cytosol, golgi	19.41	21.85
KRH31646	Soybean	cytosol	18.59	21.81
KRH08628	Soybean	plastid	19.74	21.74
KRH08277	Soybean	plastid	20.23	21.69
PGSC0003DMT400025074	Potato	cytosol	19.57	21.56
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.24	21.55
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	11.51	21.54
KRH17148	Soybean	mitochondrion	19.24	21.47
KRH09121	Soybean	mitochondrion	18.75	21.35
KRH41817	Soybean	mitochondrion	19.41	21.26
Bra031731.1-P	Field mustard	mitochondrion	17.76	21.26
KRH40400	Soybean	plastid	20.07	21.14
KRH09154	Soybean	mitochondrion	19.24	21.04
KRH08607	Soybean	cytosol	19.41	21.03
KRH08625	Soybean	plastid	19.9	21.01
Solyc06g007300.1.1	Tomato	extracellular	20.23	20.78
PGSC0003DMT400056665	Potato	mitochondrion	20.07	20.71
Bra021192.1-P	Field mustard	plastid	17.11	20.63
KRH39050	Soybean	mitochondrion	17.93	20.49
AT1G62720.1	Thale cress	mitochondrion	16.28	20.41
PGSC0003DMT400052971	Potato	mitochondrion	19.9	20.4
Bra036651.1-P	Field mustard	mitochondrion	17.93	20.37
AT1G63080.3	Thale cress	mitochondrion	20.56	20.36
Solyc06g007740.1.1	Tomato	cytosol	19.74	20.34
AT1G64583.1	Thale cress	mitochondrion	17.11	20.31
AT1G12300.1	Thale cress	mitochondrion	21.22	20.25
VIT_14s0030g02280.t01	Wine grape	plastid	18.59	20.14
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.56	20.13
AT3G16710.1	Thale cress	mitochondrion	16.78	20.12
PGSC0003DMT400056663	Potato	plastid	19.41	20.07
PGSC0003DMT400053185	Potato	mitochondrion	19.41	20.0
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.62	19.92
AT1G62680.2	Thale cress	plastid	17.93	19.89
AT1G63150.1	Thale cress	mitochondrion	20.39	19.71
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.07	19.71
AT1G62914.1	Thale cress	mitochondrion	17.11	19.7
AT1G64580.1	Thale cress	mitochondrion	16.94	19.69
AT1G62670.1	Thale cress	mitochondrion	20.39	19.68
AT1G63130.1	Thale cress	mitochondrion	20.39	19.68
AT1G63400.1	Thale cress	cytosol, plastid	18.59	19.58
PGSC0003DMT400008760	Potato	mitochondrion	18.75	19.45
AT1G12700.2	Thale cress	cytosol	19.74	19.42
AT1G62590.1	Thale cress	mitochondrion	20.23	19.4
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.62	19.35
AT1G62910.1	Thale cress	mitochondrion	20.07	19.3
Solyc04g080120.1.1	Tomato	extracellular	19.41	19.28
Bra026957.1-P	Field mustard	mitochondrion	19.08	19.24
Bra026971.1-P	Field mustard	mitochondrion	19.9	19.24
AT1G06580.1	Thale cress	mitochondrion	15.79	19.2
Bra028267.1-P	Field mustard	mitochondrion	19.74	19.17
AT5G41170.1	Thale cress	mitochondrion	16.61	19.17
Bra016762.1-P	Field mustard	mitochondrion	19.08	19.11
KRH09097	Soybean	plastid	18.26	19.04
PGSC0003DMT400015293	Potato	mitochondrion	19.08	19.02
PGSC0003DMT400015298	Potato	mitochondrion	19.08	19.02
Bra026958.1-P	Field mustard	mitochondrion	19.9	19.0
AT1G63070.1	Thale cress	mitochondrion	18.42	18.98
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.07	18.94
Bra027026.1-P	Field mustard	mitochondrion	16.28	18.93
AT1G62930.1	Thale cress	plastid	19.57	18.92
PGSC0003DMT400053182	Potato	cytosol	18.59	18.86
KRH09095	Soybean	plastid	17.76	18.46
Bra026954.1-P	Field mustard	mitochondrion	19.41	18.15
KRH08599	Soybean	cytosol, plastid	19.9	18.09
PGSC0003DMT400053556	Potato	mitochondrion	13.65	18.08
Bra026401.1-P	Field mustard	plastid	15.62	17.76
AT4G26800.2	Thale cress	mitochondrion, plastid	14.31	16.93
KRH09085	Soybean	mitochondrion	19.41	16.76
AT1G64100.2	Thale cress	cytosol	21.88	16.5
KRH12873	Soybean	cytosol	18.26	15.95
Bra027726.1-P	Field mustard	mitochondrion	12.34	15.92
Bra027656.1-P	Field mustard	cytosol	24.18	15.62
KRH39064	Soybean	cytosol	22.37	14.04
Bra016758.1-P	Field mustard	plastid	20.39	10.7
TraesCS6B01G129100.1	Wheat	cytosol, plastid	3.78	7.99

Protein Annotations

EnsemblPlants:TraesCS1B01G039700.1	EnsemblPlantsGene:TraesCS1B01G039700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:19073838..19075664

Molecular Weight (calculated)

67635.2 Da

IEP (calculated)

8.418

GRAVY (calculated)

0.063

Length

608 amino acids

Sequence
(BLAST)

001: MPELGCTTHV VAYNTVIHGF FREGQVGKAC DIFHGMAQQG VAPNVVTYNS VIDALCKARA MDKAEYFLGQ MVDSGVVPNN VTYNSLIHGY SSSGHSKEAV
101: RVLKQMTSKG IIPDVFTCNL LMASLCNNRR SKEAAELFDS MAMKGLKPNT VSYAILLHGY ATEGCLVDMI NLFNSMATDC ILPNCRIFNI LINAYAKSGK
201: LDKAMLIFKE MHKRGVSPDV VTYSTVIHAF CKMGSLDIAM DKFNQMVDMG VRPNATVYHS LIQGFCTHGD LVKAKELVTE MRNKAMRPPD IKFFHSIMQN
301: LCTEGRVIEA RDILDLMLHI GMRPDVPIFN LLIGGYCLVR EMEDATKMFD DMVSYGLEPC NNTYGILING YCKNRRIDDG LILFKEMLRK GLKPTTFNYN
401: VILDGLFLAG RTVAAKVKFN EMVESGVSVC IDTYSIVLGG LCRNNCTGEA ITLSKKLSTM NVKFNIAIVN ILIGAFFRVR RNQEAKDLFA AIPANGLVPN
501: AVTYTIMMTN LIKEGPVEEA DNLFLSMEKS GCSANSYMLN HIIRRLLEKG EMVKAGNYMS KVDAKSYSLE AKTVSLLISL FSRKGKYREH IKLLPTKYQF
601: LEEAATVE

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.