Factsheet for TraesCS2B01G559900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G560300.1	Wheat	cytosol	90.22	85.94
TraesCS2A01G531000.1	Wheat	golgi	87.45	69.81
TraesCS7B01G469500.1	Wheat	cytosol	69.37	66.9
TraesCS2B01G560700.1	Wheat	plastid	91.51	64.33
TraesCS6B01G341800.2	Wheat	cytosol	37.27	50.63
TraesCS1B01G075300.1	Wheat	cytosol	55.35	50.25
TraesCS1B01G039700.1	Wheat	cytosol	56.27	50.16
TraesCS1B01G084800.1	Wheat	cytosol	42.44	49.57
TraesCS1B01G038600.1	Wheat	cytosol	33.03	49.31
TraesCS1B01G085400.1	Wheat	cytosol	57.75	48.83
TraesCS1B01G038400.1	Wheat	cytosol	54.61	48.68
TraesCS1B01G073100.1	Wheat	cytosol	54.24	48.51
TraesCS2B01G126900.1	Wheat	cytosol	31.37	44.5
TraesCS1B01G072400.1	Wheat	cytosol	54.8	42.73
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	48.89	39.91
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	31.18	38.5
TraesCS1B01G072700.1	Wheat	cytosol	36.16	38.43
TraesCS1B01G085300.1	Wheat	mitochondrion	56.09	38.38
TraesCS1B01G085900.1	Wheat	mitochondrion	57.38	38.21
TraesCS1B01G038500.1	Wheat	mitochondrion	55.54	38.1
TraesCS6B01G127200.1	Wheat	cytosol	24.17	38.08
TraesCS1B01G039100.1	Wheat	mitochondrion	54.98	38.06
TraesCS6B01G114300.1	Wheat	cytosol	26.94	37.53
TraesCS1B01G039200.1	Wheat	mitochondrion	54.24	37.5
TraesCS1B01G092500.1	Wheat	mitochondrion	52.58	36.4
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	50.0	34.74
TraesCS1B01G072900.2	Wheat	mitochondrion	55.17	34.25
TraesCS1B01G038300.1	Wheat	plastid	33.21	32.97
TraesCS1B01G086000.1	Wheat	plastid	41.14	32.51
TraesCS1B01G038200.1	Wheat	mitochondrion	37.64	32.23
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	42.25	32.03
TraesCS6B01G021600.1	Wheat	mitochondrion	41.88	31.7
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	41.51	31.47
TraesCS1B01G071600.1	Wheat	mitochondrion	47.42	30.31
TraesCS1B01G073200.1	Wheat	cytosol	16.05	28.71
TraesCS6B01G127500.1	Wheat	cytosol	24.72	27.35
PGSC0003DMT400052977	Potato	cytosol	19.37	26.99
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	25.09	26.93
Solyc06g007280.2.1	Tomato	cytosol	12.55	26.67
Bra027636.1-P	Field mustard	cytosol	15.31	25.62
TraesCS1B01G072300.1	Wheat	plastid	26.75	25.53
PGSC0003DMT400008759	Potato	cytosol	14.94	25.39
TraesCS1B01G092600.1	Wheat	plastid	23.99	25.15
Solyc06g007810.1.1	Tomato	cytosol	12.36	25.0
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	19.56	24.48
Solyc06g005220.2.1	Tomato	cytosol	18.08	24.14
Bra027029.1-P	Field mustard	mitochondrion	10.7	23.87
VIT_14s0081g00110.t01	Wine grape	cytosol	21.59	23.83
KRH09082	Soybean	cytosol	17.71	23.53
PGSC0003DMT400025067	Potato	cytosol	19.93	22.69
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.74	22.43
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.48	21.98
KRH39074	Soybean	cytosol	20.11	21.93
KRH39112	Soybean	cytosol	20.11	21.93
KRH39054	Soybean	cytosol	19.93	21.73
KRH39057	Soybean	cytosol	19.93	21.73
Bra006187.1-P	Field mustard	plastid	11.62	21.65
Bra026884.1-P	Field mustard	cytosol	18.08	21.35
KRH39004	Soybean	cytosol	19.56	21.33
KRH39072	Soybean	cytosol	19.37	21.17
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.19	21.01
CDX68679	Canola	cytosol	4.43	20.87
KRH08636	Soybean	cytosol	19.74	20.5
Bra036649.1-P	Field mustard	cytosol	14.58	20.2
KRH40513	Soybean	plastid	12.92	19.94
KRH08628	Soybean	plastid	20.3	19.93
VIT_14s0081g00270.t01	Wine grape	plastid	21.03	19.66
KRH08607	Soybean	cytosol	20.3	19.61
VIT_14s0081g00120.t01	Wine grape	plastid	21.03	19.55
KRH48615	Soybean	mitochondrion	19.56	19.45
AT5G16640.1	Thale cress	mitochondrion	18.08	19.44
KRH25652	Soybean	cytosol, golgi	19.37	19.44
KRH08277	Soybean	plastid	20.3	19.4
KRH40400	Soybean	plastid	20.48	19.24
VIT_14s0030g02260.t01	Wine grape	cytosol	15.68	19.19
Bra026882.1-P	Field mustard	cytosol	18.82	19.1
KRH39066	Soybean	cytosol	19.56	19.1
KRH17148	Soybean	mitochondrion	19.19	19.08
PGSC0003DMT400008757	Potato	cytosol	17.53	19.08
KRH08671	Soybean	cytosol, mitochondrion	19.37	18.99
KRH08639	Soybean	mitochondrion, plastid	19.56	18.76
KRH08625	Soybean	plastid	19.93	18.75
KRH31646	Soybean	cytosol	17.9	18.73
PGSC0003DMT400025074	Potato	cytosol	19.0	18.66
KRH39050	Soybean	mitochondrion	18.27	18.61
PGSC0003DMT400053185	Potato	mitochondrion	20.11	18.47
KRH09084	Soybean	plastid	17.34	18.4
KRH41817	Soybean	mitochondrion	18.82	18.38
KRH09154	Soybean	mitochondrion	18.82	18.35
Bra031731.1-P	Field mustard	mitochondrion	17.16	18.31
PGSC0003DMT400056665	Potato	mitochondrion	19.74	18.17
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.53	18.1
PGSC0003DMT400015293	Potato	mitochondrion	20.3	18.03
PGSC0003DMT400015298	Potato	mitochondrion	20.3	18.03
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.87	18.03
KRH09121	Soybean	mitochondrion	17.71	17.98
Solyc04g080120.1.1	Tomato	extracellular	20.3	17.97
Solyc06g007740.1.1	Tomato	cytosol	19.56	17.97
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	12.55	17.94
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.03	17.84
Solyc06g007300.1.1	Tomato	extracellular	19.37	17.74
VIT_14s0030g02280.t01	Wine grape	plastid	18.27	17.65
AT1G64583.1	Thale cress	mitochondrion	16.61	17.58
AT3G16710.1	Thale cress	mitochondrion	16.42	17.55
PGSC0003DMT400052971	Potato	mitochondrion	19.19	17.54
AT1G06580.1	Thale cress	mitochondrion	16.05	17.4
Bra036651.1-P	Field mustard	mitochondrion	16.97	17.2
AT1G62680.2	Thale cress	plastid	17.34	17.15
Bra021192.1-P	Field mustard	plastid	15.87	17.06
PGSC0003DMT400056663	Potato	plastid	18.27	16.84
Bra027026.1-P	Field mustard	mitochondrion	16.24	16.83
KRH09097	Soybean	plastid	18.08	16.81
KRH09095	Soybean	plastid	18.08	16.75
AT1G62670.1	Thale cress	mitochondrion	19.37	16.67
AT1G63330.2	Thale cress	cytosol	17.16	16.64
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	9.96	16.62
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.0	16.59
Bra026971.1-P	Field mustard	mitochondrion	19.19	16.53
TraesCS1B01G315500.1	Wheat	mitochondrion	9.78	16.51
AT5G41170.1	Thale cress	mitochondrion	16.05	16.51
Bra026958.1-P	Field mustard	mitochondrion	19.37	16.48
Bra016762.1-P	Field mustard	mitochondrion	18.45	16.47
PGSC0003DMT400008760	Potato	mitochondrion	17.71	16.38
AT1G12300.1	Thale cress	mitochondrion	19.19	16.33
AT1G64580.1	Thale cress	mitochondrion	15.68	16.25
AT1G62930.1	Thale cress	plastid	18.82	16.22
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.24	16.21
AT3G22470.1	Thale cress	cytosol, mitochondrion	18.45	16.16
Bra026957.1-P	Field mustard	mitochondrion	17.9	16.09
AT1G62720.1	Thale cress	mitochondrion	14.39	16.08
PGSC0003DMT400053182	Potato	cytosol	17.71	16.03
AT1G12700.2	Thale cress	cytosol	18.27	16.02
AT1G63130.1	Thale cress	mitochondrion	18.45	15.87
AT1G63080.3	Thale cress	mitochondrion	17.9	15.8
PGSC0003DMT400053556	Potato	mitochondrion	13.28	15.69
Bra028267.1-P	Field mustard	mitochondrion	18.08	15.65
KRH08599	Soybean	cytosol, plastid	19.19	15.55
Bra026954.1-P	Field mustard	mitochondrion	18.63	15.54
AT1G62910.1	Thale cress	mitochondrion	18.08	15.51
AT4G26800.2	Thale cress	mitochondrion, plastid	14.39	15.18
AT1G63070.1	Thale cress	mitochondrion	16.42	15.08
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.65	15.07
AT1G12775.1	Thale cress	cytosol, mitochondrion	17.9	15.06
Bra026401.1-P	Field mustard	plastid	14.76	14.95
KRH12873	Soybean	cytosol	19.19	14.94
AT1G63400.1	Thale cress	cytosol, plastid	15.87	14.9
AT1G63150.1	Thale cress	mitochondrion	17.16	14.79
AT1G62590.1	Thale cress	mitochondrion	17.16	14.67
KRH09085	Soybean	mitochondrion	18.08	13.92
AT1G62914.1	Thale cress	mitochondrion	13.47	13.83
Bra027726.1-P	Field mustard	mitochondrion	11.99	13.8
AT1G64100.2	Thale cress	cytosol	20.11	13.52
Bra027656.1-P	Field mustard	cytosol	21.4	12.33
KRH39064	Soybean	cytosol	20.66	11.56
Bra016758.1-P	Field mustard	plastid	18.08	8.46
TraesCS6B01G129100.1	Wheat	cytosol, plastid	1.66	3.12

Protein Annotations

EnsemblPlants:TraesCS2B01G559900.1	EnsemblPlantsGene:TraesCS2B01G559900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:753786212..753787927

Molecular Weight (calculated)

59832.3 Da

IEP (calculated)

6.510

GRAVY (calculated)

0.113

Length

542 amino acids

Sequence
(BLAST)

001: MPQLGVQPDV VTYTSIMDAL SKSGAMDKAE VLLRQMVDQG IEPNIRTYSC LIHGYSTFGQ WKEALRVFKE MASLGVVPDV VTLSSLIDSL CRHRRTKQAR
101: EIFDSMAAKG LKPNIVSYST MLNGYVKEGS FEDMTGLFNS MVRNGIVPNH HIFNILINAY AKRGLMDEAM HMFEVMRQQG VNPDVFGYQI IMDSLCKMGK
201: MDAALDKFNQ MVNQGVSPNK AVYQCLVLGS CSHGDFVKAK ELISEAVNRG LCSNSVFFYP VINDLCKEGK VKEAHDMFDF ILVLDAMKSA GLQPDVFTYG
301: TLLNGYCKIG RIADGLSLFR EMSLSGVKPT TIMYNIILDG LFRSGRTDSA KEEFDTMIES GIPVGIDTCT IVLSGLCKNN CTDEAIELFK KLCAMNVKFD
401: VIILNTMISS MFKTRRIEEA KDLFATISTI GLVPSVVTYS VMMTNFIKEG SLAEADDMFL AMEKASCAPN SILLNQVVRA LLKKGAVVKA ATYLAKLDAK
501: QLSVEASTIS LIVFLFSGEG KLREHVELLP VKYQPPESSA DS

Best Arabidopsis Sequence Match ( AT1G63070.1 )
(BLAST)

001: MMRSVAVIGK KCLHRHTVLL KGNPRTTLCW ERSFAGASSD DCRENLSRKV LQDLKLDDAI GLFGDMVKSR PFPSIVEFSK LLSAIAKMNK FDLVISLGEQ
101: MQNLGISHNL YTYSIFINYF CRRSQLSLAL AILGKMMKLG YGPSIVTLNS LLNGFCHGNR ISEAVALVDQ MVEMGYQPDT VTFTTLVHGL FQHNKASEAV
201: ALVERMVVKG CQPDLVTYGA VINGLCKRGE PDLALNLLNK MEKGKIEADV VIYNTIIDGL CKYKHMDDAF DLFNKMETKG IKPDVFTYNP LISCLCNYGR
301: WSDASRLLSD MLEKNINPDL VFFNALIDAF VKEGKLVEAE KLYDEMVKSK HCFPDVVAYN TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYTTLIHG
401: FFQARDCDNA QMVFKQMVSD GVHPDIMTYN ILLDGLCNNG NVETALVVFE YMQKRDMKLD IVTYTTMIEA LCKAGKVEDG WDLFCSLSLK GVKPNVVTYT
501: TMMSGFCRKG LKEEADALFV EMKEDGPLPN SGTYNTLIRA RLRDGDEAAS AELIKEMRSC GFAGDASTFG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63070, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.