Factsheet for TraesCS1B01G084800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G067600.1	Wheat	cytosol	73.28	93.15
TraesCS6B01G341800.2	Wheat	cytosol	60.34	70.18
TraesCS1B01G038600.1	Wheat	cytosol	45.47	58.13
TraesCS1B01G075300.1	Wheat	cytosol	68.53	53.27
TraesCS1B01G073100.1	Wheat	cytosol	65.3	50.0
TraesCS1B01G085400.1	Wheat	cytosol	68.1	49.3
TraesCS1B01G039700.1	Wheat	cytosol	57.97	44.24
TraesCS1B01G038400.1	Wheat	cytosol	57.54	43.91
TraesCS1B01G072400.1	Wheat	cytosol	65.52	43.74
TraesCS2B01G559900.1	Wheat	cytosol	49.57	42.44
TraesCS2B01G560300.1	Wheat	cytosol	51.51	42.0
TraesCS1B01G092500.1	Wheat	mitochondrion	68.1	40.36
TraesCS1B01G085300.1	Wheat	mitochondrion	67.67	39.65
TraesCS1B01G038300.1	Wheat	plastid	46.12	39.19
TraesCS1B01G085900.1	Wheat	mitochondrion	68.32	38.94
TraesCS6B01G114300.1	Wheat	cytosol	32.54	38.82
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	55.39	38.7
KXG35774	Sorghum	cytosol, mitochondrion	37.72	37.0
TraesCS1B01G038500.1	Wheat	mitochondrion	60.99	35.82
TraesCS1B01G072900.2	Wheat	mitochondrion	66.81	35.51
TraesCS1B01G039200.1	Wheat	mitochondrion	59.05	34.95
TraesCS1B01G072700.1	Wheat	cytosol	38.36	34.9
TraesCS1B01G039100.1	Wheat	mitochondrion	57.76	34.23
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	57.33	34.1
TraesCS2B01G126900.1	Wheat	cytosol	28.02	34.03
TraesCS1B01G071600.1	Wheat	mitochondrion	60.13	32.9
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	53.45	32.38
TraesCS7B01G469500.1	Wheat	cytosol	38.58	31.85
Zm00001d007534_P001	Maize	plastid	53.23	31.79
TraesCS2B01G560700.1	Wheat	plastid	51.72	31.13
Zm00001d007531_P001	Maize	plastid	53.45	30.47
Zm00001d007555_P001	Maize	plastid	53.45	30.47
Zm00001d007559_P001	Maize	plastid	53.45	30.36
Zm00001d007548_P001	Maize	plastid	53.23	30.34
TraesCS1B01G086000.1	Wheat	plastid	44.4	30.03
KXG28799	Sorghum	plastid	48.49	29.61
Os04t0351333-00	Rice	cytosol	55.82	29.47
Solyc06g007810.1.1	Tomato	cytosol	15.95	27.61
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	41.81	27.13
TraesCS6B01G021600.1	Wheat	mitochondrion	41.81	27.09
TraesCS1B01G038200.1	Wheat	mitochondrion	36.85	27.01
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	40.3	26.15
PGSC0003DMT400008759	Potato	cytosol	16.81	24.45
TraesCS1B01G073200.1	Wheat	cytosol	15.95	24.42
TraesCS1B01G092600.1	Wheat	plastid	26.29	23.6
CDX68679	Canola	cytosol	5.82	23.48
TraesCS6B01G127200.1	Wheat	cytosol	16.16	21.8
Bra006187.1-P	Field mustard	plastid	13.15	20.96
PGSC0003DMT400052977	Potato	cytosol	16.59	19.79
TraesCS1B01G072300.1	Wheat	plastid	24.14	19.72
Bra027029.1-P	Field mustard	mitochondrion	10.13	19.34
VIT_14s0081g00110.t01	Wine grape	cytosol	20.04	18.94
VIT_14s0030g02260.t01	Wine grape	cytosol	17.89	18.74
Solyc06g005220.2.1	Tomato	cytosol	15.73	17.98
KRH39074	Soybean	cytosol	19.18	17.91
Bra026884.1-P	Field mustard	cytosol	17.46	17.65
Bra027636.1-P	Field mustard	cytosol	12.28	17.59
KRH09082	Soybean	cytosol	15.3	17.4
KRH39004	Soybean	cytosol	18.53	17.3
KRH39054	Soybean	cytosol	18.32	17.1
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.53	17.03
KRH39057	Soybean	cytosol	18.1	16.9
KRH39112	Soybean	cytosol	17.89	16.7
KRH08636	Soybean	cytosol	18.53	16.48
KRH39072	Soybean	cytosol	17.46	16.33
PGSC0003DMT400008757	Potato	cytosol	17.46	16.27
KRH39066	Soybean	cytosol	18.97	15.86
VIT_14s0081g00120.t01	Wine grape	plastid	19.83	15.78
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.59	15.68
KRH09154	Soybean	mitochondrion	18.75	15.65
KRH25652	Soybean	cytosol, golgi	18.1	15.56
KRH08671	Soybean	cytosol, mitochondrion	18.53	15.55
KRH08607	Soybean	cytosol	18.53	15.33
VIT_12s0028g02320.t01	Wine grape	mitochondrion	15.73	15.3
KRH08628	Soybean	plastid	18.1	15.22
VIT_14s0081g00270.t01	Wine grape	plastid	18.97	15.17
Bra026882.1-P	Field mustard	cytosol	17.46	15.17
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	16.38	15.05
KRH08277	Soybean	plastid	18.32	14.99
TraesCS6B01G127500.1	Wheat	cytosol	15.73	14.9
KRH08639	Soybean	mitochondrion, plastid	18.1	14.87
KRH17148	Soybean	mitochondrion	17.46	14.86
PGSC0003DMT400025067	Potato	cytosol	15.09	14.71
KRH08625	Soybean	plastid	18.1	14.58
KRH09084	Soybean	plastid	15.73	14.29
PGSC0003DMT400025074	Potato	cytosol	16.81	14.13
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	13.36	14.12
Solyc06g007740.1.1	Tomato	cytosol	17.89	14.07
KRH40400	Soybean	plastid	17.46	14.04
KRH48615	Soybean	mitochondrion	16.38	13.95
PGSC0003DMT400025087	Potato	endoplasmic reticulum	14.87	13.94
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	15.73	13.9
PGSC0003DMT400053185	Potato	mitochondrion	17.46	13.73
KRH41817	Soybean	mitochondrion	16.38	13.69
PGSC0003DMT400053182	Potato	cytosol	17.67	13.69
KRH40513	Soybean	plastid	10.34	13.68
Bra036649.1-P	Field mustard	cytosol	11.42	13.55
KRH09121	Soybean	mitochondrion	15.52	13.48
VIT_14s0081g00280.t01	Wine grape	mitochondrion	18.53	13.46
PGSC0003DMT400015293	Potato	mitochondrion	17.67	13.44
PGSC0003DMT400015298	Potato	mitochondrion	17.67	13.44
PGSC0003DMT400056663	Potato	plastid	17.03	13.44
Solyc04g080120.1.1	Tomato	extracellular	17.67	13.4
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.58	13.21
Bra031731.1-P	Field mustard	mitochondrion	14.44	13.19
Solyc06g007300.1.1	Tomato	extracellular	16.81	13.18
AT1G63330.2	Thale cress	cytosol	15.73	13.06
PGSC0003DMT400008760	Potato	mitochondrion	16.38	12.97
Bra036651.1-P	Field mustard	mitochondrion	14.87	12.9
AT1G62720.1	Thale cress	mitochondrion	13.36	12.78
KRH31646	Soybean	cytosol	14.22	12.74
Bra027726.1-P	Field mustard	mitochondrion	12.93	12.74
PGSC0003DMT400056665	Potato	mitochondrion	16.16	12.73
AT1G12620.1	Thale cress	cytosol, mitochondrion	17.03	12.72
PGSC0003DMT400052971	Potato	mitochondrion	16.16	12.65
AT3G16710.1	Thale cress	mitochondrion	13.79	12.62
AT1G62930.1	Thale cress	plastid	17.03	12.56
AT1G64583.1	Thale cress	mitochondrion	13.79	12.5
AT3G22470.1	Thale cress	cytosol, mitochondrion	16.59	12.44
KRH08599	Soybean	cytosol, plastid	17.67	12.26
AT1G12300.1	Thale cress	mitochondrion	16.81	12.24
AT1G64580.1	Thale cress	mitochondrion	13.79	12.24
AT1G62680.2	Thale cress	plastid	14.44	12.23
Bra016762.1-P	Field mustard	mitochondrion	15.95	12.19
Bra026958.1-P	Field mustard	mitochondrion	16.59	12.09
KRH39050	Soybean	mitochondrion	13.79	12.03
KRH09097	Soybean	plastid	15.09	12.01
Bra027658.1-P	Field mustard	cytosol, mitochondrion	14.01	11.97
VIT_14s0030g02280.t01	Wine grape	plastid	14.44	11.94
AT5G16640.1	Thale cress	mitochondrion	12.93	11.9
Bra021192.1-P	Field mustard	plastid	12.93	11.9
Bra027026.1-P	Field mustard	mitochondrion	13.36	11.85
Bra028267.1-P	Field mustard	mitochondrion	15.95	11.82
AT1G12775.1	Thale cress	cytosol, mitochondrion	16.38	11.8
KRH09095	Soybean	plastid	14.87	11.79
AT5G41170.1	Thale cress	mitochondrion	13.36	11.76
AT1G12700.2	Thale cress	cytosol	15.52	11.65
AT1G63130.1	Thale cress	mitochondrion	15.73	11.59
Bra026954.1-P	Field mustard	mitochondrion	16.16	11.54
AT1G62590.1	Thale cress	mitochondrion	15.73	11.51
Bra026971.1-P	Field mustard	mitochondrion	15.52	11.45
Bra026957.1-P	Field mustard	mitochondrion	14.87	11.44
Bra026401.1-P	Field mustard	plastid	13.15	11.4
Solyc06g007280.2.1	Tomato	cytosol	6.25	11.37
KRH12873	Soybean	cytosol	17.03	11.35
AT1G62670.1	Thale cress	mitochondrion	15.3	11.27
AT1G62910.1	Thale cress	mitochondrion	15.3	11.23
AT1G63150.1	Thale cress	mitochondrion	15.09	11.13
AT1G63080.3	Thale cress	mitochondrion	14.66	11.07
AT1G63070.1	Thale cress	mitochondrion	14.01	11.02
AT1G06580.1	Thale cress	mitochondrion	11.64	10.8
PGSC0003DMT400053556	Potato	mitochondrion	10.34	10.46
AT1G63400.1	Thale cress	cytosol, plastid	12.93	10.4
AT1G64100.2	Thale cress	cytosol	17.89	10.3
KRH09085	Soybean	mitochondrion	15.52	10.23
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	9.48	10.16
Bra027656.1-P	Field mustard	cytosol	19.18	9.46
KRH39064	Soybean	cytosol	19.4	9.29
AT1G62914.1	Thale cress	mitochondrion	10.56	9.28
AT4G26800.2	Thale cress	mitochondrion, plastid	10.13	9.14
Os04t0349600-01	Rice	plastid	7.33	8.79
Bra016758.1-P	Field mustard	plastid	15.73	6.3
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	3.88	4.75
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	0.43	0.62
TraesCS1A01G066600.1	Wheat	mitochondrion	0.22	0.38
TraesCS1B01G315500.1	Wheat	mitochondrion	0.0	0.0
TraesCS6B01G129100.1	Wheat	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1B01G084800.1	EnsemblPlantsGene:TraesCS1B01G084800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr1B:-:69547272..69548666

Molecular Weight (calculated)

50955.4 Da

IEP (calculated)

8.233

GRAVY (calculated)

0.138

Length

464 amino acids

Sequence
(BLAST)

001: MAAKGHKPDV VSYRVLLQGY ATEGCFADMV DLYNSMARNG IVPNRQVFNI LIDAYAKRGM TDEATLIFTE MRGQGLSPDV CTYSTLISAL SRTGRLADAM
101: DRFSQMISIG IQPDAVVYQA LIQGYCTVGD LVKAKGLVSE MMNRGIPPTD IVFFNSIMSS LCKEGRVTNA HSILDFVIHF GERPSIITFN FLIDGYCLVG
201: KMKKAFGVLD TMASVGIGLD DISYSAIING CFKNGRIDDG LTIFREMLKK VTPTTVTYNI ILGGLFCAGQ TVAAQKMFHE MIESGITVSS STYRTILGGL
301: CRNSCEDEAI TLFQKLGAMN VKLDIAILNT MINAMFKVQR REEAIDLFAA VSSSGLVPNA STYGVMIKNL LREGSVEKAE NMFSLMEKSG CAPDSRLIND
401: IIRILLQKGE IVKAGNYMSK VDGRRISLEA RTTSLLIRLF SSEGKYRGQI NLLPVKYQNF DGFS

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.