Factsheet for TraesCS1B01G038200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G315500.1	Wheat	mitochondrion	43.29	85.36
TraesCS2B01G126900.1	Wheat	cytosol	49.92	82.72
TraesCS1B01G039200.1	Wheat	mitochondrion	86.57	69.9
TraesCS1B01G038400.1	Wheat	cytosol	65.88	68.59
TraesCS1B01G039100.1	Wheat	mitochondrion	84.52	68.33
TraesCS1A01G031700.1	Wheat	plastid	78.2	66.8
TraesCS1B01G038500.1	Wheat	mitochondrion	81.67	65.44
HORVU1Hr1G004750.6	Barley	plastid	78.04	61.9
TraesCS1B01G039700.1	Wheat	cytosol	56.08	58.39
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	64.14	58.08
TraesCS1B01G038300.1	Wheat	plastid	49.61	57.51
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	38.07	54.9
TraesCS1B01G092600.1	Wheat	plastid	42.81	52.42
TraesCS1B01G072300.1	Wheat	plastid	46.92	52.29
TraesCS1B01G086000.1	Wheat	plastid	55.13	50.87
TraesCS6B01G127200.1	Wheat	cytosol	27.33	50.29
TraesCS6B01G127500.1	Wheat	cytosol	38.7	50.0
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	39.34	49.31
TraesCS1B01G073200.1	Wheat	cytosol	23.06	48.18
TraesCS1B01G038600.1	Wheat	cytosol	27.49	47.93
TraesCS7B01G469500.1	Wheat	cytosol	42.34	47.69
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	58.61	47.56
TraesCS1B01G072700.1	Wheat	cytosol	37.6	46.67
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	48.5	46.23
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	31.6	46.19
TraesCS1B01G071600.1	Wheat	mitochondrion	60.66	45.28
TraesCS1B01G092500.1	Wheat	mitochondrion	55.61	44.96
Zm00001d007534_P001	Maize	plastid	55.13	44.92
TraesCS1B01G085900.1	Wheat	mitochondrion	57.03	44.35
KXG28799	Sorghum	plastid	52.45	43.68
TraesCS1B01G072400.1	Wheat	cytosol	47.87	43.6
Os04t0349600-01	Rice	plastid	26.54	43.41
TraesCS2B01G560700.1	Wheat	plastid	52.76	43.32
TraesCS1B01G075300.1	Wheat	cytosol	40.76	43.22
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	52.13	43.08
Zm00001d007531_P001	Maize	plastid	55.29	43.0
Zm00001d007548_P001	Maize	plastid	54.98	42.75
Zm00001d007555_P001	Maize	plastid	54.82	42.63
Zm00001d007559_P001	Maize	plastid	54.98	42.59
TraesCS1B01G085300.1	Wheat	mitochondrion	52.92	42.3
TraesCS1B01G072900.2	Wheat	mitochondrion	57.82	41.92
TraesCS1B01G085400.1	Wheat	cytosol	42.18	41.65
TraesCS1B01G073100.1	Wheat	cytosol	39.18	40.92
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	21.01	40.92
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	23.38	39.05
KXG35774	Sorghum	cytosol, mitochondrion	28.75	38.48
TraesCS2B01G560300.1	Wheat	cytosol	34.28	38.14
TraesCS2B01G559900.1	Wheat	cytosol	32.23	37.64
TraesCS1B01G084800.1	Wheat	cytosol	27.01	36.85
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	41.07	36.36
TraesCS6B01G021600.1	Wheat	mitochondrion	40.6	35.89
TraesCS6B01G129100.1	Wheat	cytosol, plastid	16.11	35.42
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	39.81	35.24
TraesCS6B01G114300.1	Wheat	cytosol	21.17	34.45
Solyc06g007280.2.1	Tomato	cytosol	13.59	33.73
TraesCS6B01G341800.2	Wheat	cytosol	21.01	33.33
Os04t0351333-00	Rice	cytosol	45.81	32.99
VIT_12s0028g02320.t01	Wine grape	mitochondrion	24.17	32.08
KRH40513	Soybean	plastid	17.54	31.62
KRH39004	Soybean	cytosol	24.33	30.99
KRH39054	Soybean	cytosol	24.17	30.78
KRH39074	Soybean	cytosol	24.01	30.58
KRH39112	Soybean	cytosol	23.7	30.18
KRH39072	Soybean	cytosol	23.54	30.04
KRH39057	Soybean	cytosol	23.54	29.98
KRH09084	Soybean	plastid	24.17	29.94
Bra027636.1-P	Field mustard	cytosol	15.32	29.94
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	24.33	29.33
AT5G16640.1	Thale cress	mitochondrion	23.22	29.17
Bra036649.1-P	Field mustard	cytosol	17.85	28.9
KRH39066	Soybean	cytosol	25.28	28.83
KRH48615	Soybean	mitochondrion	24.64	28.62
Solyc06g005220.2.1	Tomato	cytosol	18.33	28.57
VIT_14s0081g00110.t01	Wine grape	cytosol	21.96	28.31
PGSC0003DMT400052977	Potato	cytosol	17.22	28.02
KRH39050	Soybean	mitochondrion	23.38	27.82
KRH08636	Soybean	cytosol	22.91	27.78
KRH17148	Soybean	mitochondrion	23.85	27.71
VIT_14s0081g00120.t01	Wine grape	plastid	25.43	27.62
Bra006187.1-P	Field mustard	plastid	12.64	27.49
Bra021192.1-P	Field mustard	plastid	21.8	27.38
KRH08277	Soybean	plastid	24.49	27.34
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.8	27.33
KRH08671	Soybean	cytosol, mitochondrion	23.7	27.12
KRH08628	Soybean	plastid	23.54	26.99
KRH08639	Soybean	mitochondrion, plastid	24.01	26.9
KRH41817	Soybean	mitochondrion	23.54	26.85
KRH09154	Soybean	mitochondrion	23.54	26.8
VIT_14s0081g00270.t01	Wine grape	plastid	24.49	26.72
AT1G62720.1	Thale cress	mitochondrion	20.38	26.6
KRH09121	Soybean	mitochondrion	22.43	26.59
KRH08625	Soybean	plastid	24.17	26.56
PGSC0003DMT400008757	Potato	cytosol	20.85	26.51
KRH31646	Soybean	cytosol	21.48	26.25
KRH40400	Soybean	plastid	23.85	26.17
CDX68679	Canola	cytosol	4.74	26.09
AT3G16710.1	Thale cress	mitochondrion	20.85	26.04
KRH09082	Soybean	cytosol	16.75	25.98
Bra027029.1-P	Field mustard	mitochondrion	9.95	25.93
KRH08607	Soybean	cytosol	22.91	25.85
VIT_14s0030g02280.t01	Wine grape	plastid	22.91	25.85
Solyc06g007810.1.1	Tomato	cytosol	10.9	25.75
Bra036651.1-P	Field mustard	mitochondrion	21.64	25.61
AT1G63330.2	Thale cress	cytosol	22.27	25.22
KRH25652	Soybean	cytosol, golgi	21.48	25.19
Bra025516.1-P	Field mustard	cytosol, mitochondrion	18.96	25.16
AT1G64580.1	Thale cress	mitochondrion	20.7	25.05
AT1G62914.1	Thale cress	mitochondrion	20.85	25.0
PGSC0003DMT400025074	Potato	cytosol	21.8	25.0
AT1G63400.1	Thale cress	cytosol, plastid	22.75	24.96
VIT_14s0081g00280.t01	Wine grape	mitochondrion	25.12	24.88
KRH09097	Soybean	plastid	22.91	24.87
KRH09095	Soybean	plastid	22.91	24.79
PGSC0003DMT400008759	Potato	cytosol	12.48	24.76
Bra026882.1-P	Field mustard	cytosol	20.85	24.72
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.27	24.65
AT1G63080.3	Thale cress	mitochondrion	23.85	24.59
Solyc06g007300.1.1	Tomato	extracellular	22.91	24.49
AT1G62670.1	Thale cress	mitochondrion	24.33	24.44
AT1G64583.1	Thale cress	mitochondrion	19.75	24.41
Bra026884.1-P	Field mustard	cytosol	17.69	24.4
AT3G22470.1	Thale cress	cytosol, mitochondrion	23.85	24.39
PGSC0003DMT400056663	Potato	plastid	22.59	24.32
AT1G06580.1	Thale cress	mitochondrion	19.12	24.2
AT1G62930.1	Thale cress	plastid	24.01	24.17
AT1G12620.1	Thale cress	cytosol, mitochondrion	23.7	24.15
PGSC0003DMT400056665	Potato	mitochondrion	22.43	24.11
PGSC0003DMT400053185	Potato	mitochondrion	22.43	24.07
PGSC0003DMT400025067	Potato	cytosol	18.01	23.95
Solyc06g007740.1.1	Tomato	cytosol	22.27	23.9
PGSC0003DMT400008760	Potato	mitochondrion	22.12	23.89
AT1G63130.1	Thale cress	mitochondrion	23.7	23.81
Bra027658.1-P	Field mustard	cytosol, mitochondrion	20.38	23.76
PGSC0003DMT400053556	Potato	mitochondrion	17.22	23.75
AT5G41170.1	Thale cress	mitochondrion	19.75	23.72
Bra027026.1-P	Field mustard	mitochondrion	19.59	23.71
Bra028267.1-P	Field mustard	mitochondrion	23.38	23.64
AT1G62910.1	Thale cress	mitochondrion	23.54	23.58
Bra027726.1-P	Field mustard	mitochondrion	17.54	23.57
AT1G12300.1	Thale cress	mitochondrion	23.54	23.39
Bra026971.1-P	Field mustard	mitochondrion	23.22	23.37
AT1G62680.2	Thale cress	plastid	20.22	23.36
PGSC0003DMT400052971	Potato	mitochondrion	21.8	23.27
Bra031731.1-P	Field mustard	mitochondrion	18.64	23.23
AT1G63070.1	Thale cress	mitochondrion	21.64	23.22
AT1G63150.1	Thale cress	mitochondrion	22.75	22.89
AT1G62590.1	Thale cress	mitochondrion	22.91	22.87
Bra016762.1-P	Field mustard	mitochondrion	21.64	22.57
AT1G12775.1	Thale cress	cytosol, mitochondrion	22.91	22.52
Bra026958.1-P	Field mustard	mitochondrion	22.59	22.45
Bra026957.1-P	Field mustard	mitochondrion	21.33	22.39
Solyc04g080120.1.1	Tomato	extracellular	21.64	22.39
AT1G12700.2	Thale cress	cytosol	21.8	22.33
PGSC0003DMT400053182	Potato	cytosol	21.01	22.2
PGSC0003DMT400015293	Potato	mitochondrion	21.33	22.13
PGSC0003DMT400015298	Potato	mitochondrion	21.33	22.13
Bra026954.1-P	Field mustard	mitochondrion	22.43	21.85
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.9	21.79
Bra026401.1-P	Field mustard	plastid	18.33	21.68
KRH08599	Soybean	cytosol, plastid	22.27	21.08
KRH09085	Soybean	mitochondrion	23.22	20.88
AT4G26800.2	Thale cress	mitochondrion, plastid	16.75	20.62
VIT_14s0030g02260.t01	Wine grape	cytosol	13.9	19.86
AT1G64100.2	Thale cress	cytosol	24.64	19.35
KRH12873	Soybean	cytosol	19.27	17.53
Bra027656.1-P	Field mustard	cytosol	25.28	17.0
KRH39064	Soybean	cytosol	25.91	16.92
Bra016758.1-P	Field mustard	plastid	23.22	12.68

Protein Annotations

EnsemblPlants:TraesCS1B01G038200.1	EnsemblPlantsGene:TraesCS1B01G038200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:17894256..17896564

Molecular Weight (calculated)

69845.2 Da

IEP (calculated)

8.575

GRAVY (calculated)

-0.037

Length

633 amino acids

Sequence
(BLAST)

001: MPRFSSTTPM SPLRLRLRLR LGARHSSSTS HSSRSWDPHS AFAAAAERAR SGILTPEDAH HLFDELLRQG NPVQDRPLNK LLSALARALA SATCRNGPAL
101: AVALFSRISQ GARRRVAEPT ACTYGILMDC CCRAHRLDLV FAFFGRLLRT GLKAGVIQVC TLLKGLCRAK RADEALDVLL HRMPELGCTP NVVAYTTVIH
201: GFFKEGQVGK ACNLFHGMAQ QGVAPNLVTY NSVIDALCKA KAMDKAEYFL GQMVDDGVVP DNVTYNSLIH GYSSSGHWKE AVRVFKEMTS RRVTADVHTY
301: NMFMTFLCKH GRSKEAAGIF DTMAIKGLKP DNVSYAILLH GYATEGCLVD MINLFNSMER DCILPDCRIF NILINAYAKS GKLDKAMLIF NEMQKQGASP
401: DAVTYSTVID AFCKKGQLDD AMIKFNQMID TGVPQGTAVY GSLIQGFCTH GDLVKAKELV TEMMNKGIPP PDIKFFHSIM QNLCTEGRVI EARDVLGLIA
501: HIGMKPNVCT FNILGGGYCL VGKMEDASKI FDDMMSYGLE PSNITYGILI NGYCKNERIN DGLILFKEML RKGLKPTTFN YNVILDGLFL TGRTVAAKEK
601: FDEMVESGGS AKPRSQGFVC CSISQWFGRE REI

Best Arabidopsis Sequence Match ( AT1G62590.1 )
(BLAST)

001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.