Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G137900.1 | |
| TraesCS4B01G148100.1 | |
| TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G62670.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
| AT1G62670.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
| AT1G62670.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G038300.1 | Wheat | plastid | 84.02 | 55.86 |
| TraesCS6B01G341800.2 | Wheat | cytosol | 59.23 | 53.88 |
| TraesCS1B01G038400.1 | Wheat | cytosol | 90.08 | 53.78 |
| TraesCS1B01G039700.1 | Wheat | cytosol | 82.64 | 49.34 |
| HORVU7Hr1G029840.1 | Barley | cytosol, mitochondrion | 87.6 | 45.49 |
| TraesCS1B01G084800.1 | Wheat | cytosol | 58.13 | 45.47 |
| TraesCS1B01G039100.1 | Wheat | mitochondrion | 96.97 | 44.96 |
| HORVU1Hr1G004750.6 | Barley | plastid | 87.6 | 39.85 |
| TraesCS1B01G039200.1 | Wheat | mitochondrion | 83.47 | 38.65 |
| TraesCS1B01G038500.1 | Wheat | mitochondrion | 83.2 | 38.23 |
| TraesCS1B01G075300.1 | Wheat | cytosol | 58.95 | 35.85 |
| TraesCS1B01G073100.1 | Wheat | cytosol | 58.68 | 35.15 |
| TraesCS1B01G085400.1 | Wheat | cytosol | 60.61 | 34.32 |
| TraesCS2B01G560300.1 | Wheat | cytosol | 53.44 | 34.09 |
| TraesCS1A01G031700.1 | Wheat | plastid | 68.04 | 33.33 |
| TraesCS2B01G559900.1 | Wheat | cytosol | 49.31 | 33.03 |
| KXG35774 | Sorghum | cytosol, mitochondrion | 42.98 | 32.98 |
| TraesCS1B01G072400.1 | Wheat | cytosol | 55.37 | 28.92 |
| CDX68679 | Canola | cytosol | 9.09 | 28.7 |
| TraesCS1B01G085300.1 | Wheat | mitochondrion | 60.33 | 27.65 |
| TraesCS1B01G038200.1 | Wheat | mitochondrion | 47.93 | 27.49 |
| TraesCS1B01G092500.1 | Wheat | mitochondrion | 58.4 | 27.08 |
| TraesCS1B01G085900.1 | Wheat | mitochondrion | 60.61 | 27.03 |
| Os04t0350000-02 | Rice | cytosol, mitochondrion, plastid | 54.82 | 25.98 |
| Zm00001d007534_P001 | Maize | plastid | 55.1 | 25.74 |
| TraesCS1B01G075000.1 | Wheat | cytosol, mitochondrion | 46.56 | 25.45 |
| Zm00001d007531_P001 | Maize | plastid | 55.37 | 24.69 |
| TraesCS2B01G126900.1 | Wheat | cytosol | 25.9 | 24.61 |
| Zm00001d007548_P001 | Maize | plastid | 55.1 | 24.57 |
| Zm00001d007555_P001 | Maize | plastid | 55.1 | 24.57 |
| TraesCS2B01G560700.1 | Wheat | plastid | 52.07 | 24.51 |
| Zm00001d007559_P001 | Maize | plastid | 55.1 | 24.48 |
| TraesCS6B01G114300.1 | Wheat | cytosol | 26.17 | 24.42 |
| TraesCS1B01G072900.2 | Wheat | mitochondrion | 58.68 | 24.4 |
| KXG28799 | Sorghum | plastid | 50.69 | 24.21 |
| Os04t0351333-00 | Rice | cytosol | 58.4 | 24.12 |
| TraesCS7B01G469500.1 | Wheat | cytosol | 34.71 | 22.42 |
| TraesCS1B01G071600.1 | Wheat | mitochondrion | 50.69 | 21.7 |
| TraesCS1B01G074600.1 | Wheat | mitochondrion, plastid | 46.28 | 21.54 |
| TraesCS6B01G021600.1 | Wheat | mitochondrion | 42.15 | 21.37 |
| TraesCS6B01G045200.1 | Wheat | cytosol, mitochondrion | 41.87 | 21.26 |
| TraesCS5B01G250800.1 | Wheat | cytosol, mitochondrion | 41.6 | 21.12 |
| TraesCS1B01G073200.1 | Wheat | cytosol | 16.8 | 20.13 |
| TraesCS1B01G072700.1 | Wheat | cytosol | 27.55 | 19.61 |
| Solyc06g007810.1.1 | Tomato | cytosol | 13.22 | 17.91 |
| TraesCS1B01G086000.1 | Wheat | plastid | 33.61 | 17.78 |
| PGSC0003DMT400008759 | Potato | cytosol | 12.95 | 14.73 |
| VIT_14s0030g02260.t01 | Wine grape | cytosol | 15.7 | 12.87 |
| Bra006187.1-P | Field mustard | plastid | 9.92 | 12.37 |
| PGSC0003DMT400052977 | Potato | cytosol | 13.22 | 12.34 |
| Bra027636.1-P | Field mustard | cytosol | 10.47 | 11.73 |
| VIT_14s0081g00110.t01 | Wine grape | cytosol | 15.43 | 11.41 |
| Bra026884.1-P | Field mustard | cytosol | 13.5 | 10.68 |
| KRH39004 | Soybean | cytosol | 14.6 | 10.66 |
| KRH39072 | Soybean | cytosol | 14.33 | 10.48 |
| Solyc06g005220.2.1 | Tomato | cytosol | 11.57 | 10.34 |
| KRH39054 | Soybean | cytosol | 14.05 | 10.26 |
| KRH39057 | Soybean | cytosol | 14.05 | 10.26 |
| Bra026836.1-P | Field mustard | cytosol, mitochondrion | 13.77 | 10.18 |
| KRH39074 | Soybean | cytosol | 13.77 | 10.06 |
| KRH39112 | Soybean | cytosol | 13.5 | 9.86 |
| TraesCS1B01G092600.1 | Wheat | plastid | 13.77 | 9.67 |
| Bra031731.1-P | Field mustard | mitochondrion | 13.5 | 9.65 |
| Bra027658.1-P | Field mustard | cytosol, mitochondrion | 14.33 | 9.58 |
| KRH09082 | Soybean | cytosol | 10.74 | 9.56 |
| Bra026882.1-P | Field mustard | cytosol | 14.05 | 9.55 |
| KRH48615 | Soybean | mitochondrion | 14.05 | 9.36 |
| VIT_14s0081g00270.t01 | Wine grape | plastid | 14.88 | 9.31 |
| VIT_14s0081g00120.t01 | Wine grape | plastid | 14.88 | 9.26 |
| AT1G63330.2 | Thale cress | cytosol | 14.05 | 9.12 |
| KRH08671 | Soybean | cytosol, mitochondrion | 13.77 | 9.04 |
| KRH17148 | Soybean | mitochondrion | 13.5 | 8.99 |
| Bra036649.1-P | Field mustard | cytosol | 9.64 | 8.95 |
| KRH08635 | Soybean | cytosol, golgi, mitochondrion, plastid | 12.4 | 8.91 |
| AT1G62930.1 | Thale cress | plastid | 15.43 | 8.9 |
| PGSC0003DMT400008757 | Potato | cytosol | 12.12 | 8.84 |
| KRH39066 | Soybean | cytosol | 13.5 | 8.83 |
| KRH25652 | Soybean | cytosol, golgi | 12.95 | 8.7 |
| KRH09154 | Soybean | mitochondrion | 13.22 | 8.63 |
| KRH08636 | Soybean | cytosol | 12.4 | 8.62 |
| PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 11.57 | 8.48 |
| VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 14.88 | 8.45 |
| KRH09084 | Soybean | plastid | 11.85 | 8.41 |
| Bra016762.1-P | Field mustard | mitochondrion | 14.05 | 8.4 |
| AT1G12620.1 | Thale cress | cytosol, mitochondrion | 14.33 | 8.37 |
| Bra021192.1-P | Field mustard | plastid | 11.57 | 8.33 |
| KRH08628 | Soybean | plastid | 12.67 | 8.33 |
| AT1G12700.2 | Thale cress | cytosol | 14.05 | 8.25 |
| AT3G22470.1 | Thale cress | cytosol, mitochondrion | 14.05 | 8.24 |
| AT1G12775.1 | Thale cress | cytosol, mitochondrion | 14.6 | 8.23 |
| AT1G62680.2 | Thale cress | plastid | 12.4 | 8.21 |
| PGSC0003DMT400025067 | Potato | cytosol | 10.74 | 8.19 |
| Solyc04g080120.1.1 | Tomato | extracellular | 13.77 | 8.17 |
| KRH08625 | Soybean | plastid | 12.95 | 8.16 |
| AT1G63070.1 | Thale cress | mitochondrion | 13.22 | 8.14 |
| AT1G62670.1 | Thale cress | mitochondrion | 14.05 | 8.1 |
| AT1G63130.1 | Thale cress | mitochondrion | 14.05 | 8.1 |
| PGSC0003DMT400052971 | Potato | mitochondrion | 13.22 | 8.09 |
| AT3G16710.1 | Thale cress | mitochondrion | 11.29 | 8.09 |
| AT1G62910.1 | Thale cress | mitochondrion | 14.05 | 8.07 |
| Bra027726.1-P | Field mustard | mitochondrion | 10.47 | 8.07 |
| AT1G62590.1 | Thale cress | mitochondrion | 14.05 | 8.04 |
| PGSC0003DMT400015293 | Potato | mitochondrion | 13.5 | 8.03 |
| PGSC0003DMT400015298 | Potato | mitochondrion | 13.5 | 8.03 |
| Bra028267.1-P | Field mustard | mitochondrion | 13.77 | 7.99 |
| AT1G63080.3 | Thale cress | mitochondrion | 13.5 | 7.98 |
| PGSC0003DMT400025074 | Potato | cytosol | 12.12 | 7.97 |
| KRH08639 | Soybean | mitochondrion, plastid | 12.4 | 7.96 |
| Bra026971.1-P | Field mustard | mitochondrion | 13.77 | 7.95 |
| KRH31646 | Soybean | cytosol | 11.29 | 7.92 |
| PGSC0003DMT400008760 | Potato | mitochondrion | 12.67 | 7.85 |
| AT1G62720.1 | Thale cress | mitochondrion | 10.47 | 7.84 |
| Bra027029.1-P | Field mustard | mitochondrion | 5.23 | 7.82 |
| KRH40400 | Soybean | plastid | 12.4 | 7.8 |
| Solyc06g007300.1.1 | Tomato | extracellular | 12.67 | 7.77 |
| KRH08277 | Soybean | plastid | 12.12 | 7.76 |
| AT5G16640.1 | Thale cress | mitochondrion | 10.74 | 7.74 |
| AT1G12300.1 | Thale cress | mitochondrion | 13.5 | 7.69 |
| Bra026958.1-P | Field mustard | mitochondrion | 13.5 | 7.69 |
| KRH08607 | Soybean | cytosol | 11.85 | 7.66 |
| PGSC0003DMT400056663 | Potato | plastid | 12.4 | 7.65 |
| PGSC0003DMT400056665 | Potato | mitochondrion | 12.4 | 7.64 |
| Bra026957.1-P | Field mustard | mitochondrion | 12.67 | 7.63 |
| KRH00678 | Soybean | endoplasmic reticulum, extracellular, plastid | 11.02 | 7.62 |
| VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 9.92 | 7.55 |
| Bra036651.1-P | Field mustard | mitochondrion | 11.02 | 7.48 |
| AT1G63150.1 | Thale cress | mitochondrion | 12.95 | 7.47 |
| PGSC0003DMT400053185 | Potato | mitochondrion | 12.12 | 7.46 |
| Solyc06g007740.1.1 | Tomato | cytosol | 12.12 | 7.46 |
| AT1G64580.1 | Thale cress | mitochondrion | 10.74 | 7.46 |
| PGSC0003DMT400053182 | Potato | cytosol | 12.12 | 7.35 |
| Bra025516.1-P | Field mustard | cytosol, mitochondrion | 9.64 | 7.34 |
| KRH08599 | Soybean | cytosol, plastid | 13.5 | 7.32 |
| KRH09121 | Soybean | mitochondrion | 10.74 | 7.3 |
| AT1G64583.1 | Thale cress | mitochondrion | 10.19 | 7.23 |
| AT1G06580.1 | Thale cress | mitochondrion | 9.92 | 7.2 |
| Bra026954.1-P | Field mustard | mitochondrion | 12.67 | 7.08 |
| KRH41817 | Soybean | mitochondrion | 10.74 | 7.03 |
| AT1G64100.2 | Thale cress | cytosol | 15.43 | 6.95 |
| AT5G41170.1 | Thale cress | mitochondrion | 9.92 | 6.83 |
| Bra026401.1-P | Field mustard | plastid | 9.92 | 6.73 |
| KRH09097 | Soybean | plastid | 10.74 | 6.69 |
| AT1G63400.1 | Thale cress | cytosol, plastid | 10.47 | 6.59 |
| Bra027026.1-P | Field mustard | mitochondrion | 9.37 | 6.5 |
| Bra027656.1-P | Field mustard | cytosol | 16.53 | 6.38 |
| KRH09095 | Soybean | plastid | 10.19 | 6.32 |
| KRH39050 | Soybean | mitochondrion | 9.09 | 6.2 |
| KRH39064 | Soybean | cytosol | 16.53 | 6.19 |
| TraesCS6B01G127200.1 | Wheat | cytosol | 5.79 | 6.1 |
| KRH12873 | Soybean | cytosol | 11.57 | 6.03 |
| KRH09085 | Soybean | mitochondrion | 11.57 | 5.97 |
| TraesCS1B01G072300.1 | Wheat | plastid | 9.09 | 5.81 |
| VIT_14s0030g02280.t01 | Wine grape | plastid | 8.82 | 5.7 |
| AT4G26800.2 | Thale cress | mitochondrion, plastid | 7.71 | 5.45 |
| PGSC0003DMT400053556 | Potato | mitochondrion | 6.61 | 5.23 |
| TraesCS6B01G129200.1 | Wheat | cytosol, nucleus, plastid | 7.16 | 5.15 |
| KRH40513 | Soybean | plastid | 4.96 | 5.13 |
| AT1G62914.1 | Thale cress | mitochondrion | 7.44 | 5.11 |
| Bra016758.1-P | Field mustard | plastid | 13.77 | 4.31 |
| TraesCS6B01G127500.1 | Wheat | cytosol | 5.51 | 4.08 |
| Os04t0349600-01 | Rice | plastid | 3.31 | 3.1 |
| TraesCS2B01G560000.1 | Wheat | mitochondrion, plastid | 2.48 | 2.05 |
| TraesCS6B01G021500.1 | Wheat | cytosol, mitochondrion | 0.83 | 0.79 |
| TraesCS6B01G127400.1 | Wheat | cytosol, mitochondrion | 0.55 | 0.46 |
| Solyc06g007280.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| TraesCS1B01G315500.1 | Wheat | mitochondrion | 0.0 | 0.0 |
| TraesCS6B01G021200.1 | Wheat | cytosol, mitochondrion | 0.0 | 0.0 |
| TraesCS6B01G129100.1 | Wheat | cytosol, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G038600.1 | EnsemblPlantsGene:TraesCS1B01G038600 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF874 |
| PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | TIGRFAMs:TIGR00756 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1B:-:18363375..18364466
Molecular Weight (calculated)
40237.5 Da
IEP (calculated)
7.333
GRAVY (calculated)
0.146
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDTGVRPDT AVYSSLIQGF CTHGDLVKAK EYVTEMMKKG MLPPDIKFFH SIMQNLCTEG RVIEARDVLG LIAHIGMRPD VCTFNILIGG YCLVGKMEDA
101: SKIFDDMMSY GLEPSNITYG ILINGYCKNR RIDDGLILFK EMLHKGLKPT TFNYNVILDG LFLAGRTVAA KEKFDEMVES GVSVCIGTYS TVLGGLCRNN
201: CSGEAITLFQ KLSTMDVKFN IIIVNIMIDA FYKVQRNQEA KDLFAAVSAN GLVANVFTYT IMMKNLIKEG SVEEADDLFL SMEKSGCTAD SYMLNLIVRM
301: LLGKGEIVKA GNYISKIDAK SYSLEAKTVS LLISLFSGKG KYREHIGLLP AKYRFREEAA TVV
101: SKIFDDMMSY GLEPSNITYG ILINGYCKNR RIDDGLILFK EMLHKGLKPT TFNYNVILDG LFLAGRTVAA KEKFDEMVES GVSVCIGTYS TVLGGLCRNN
201: CSGEAITLFQ KLSTMDVKFN IIIVNIMIDA FYKVQRNQEA KDLFAAVSAN GLVANVFTYT IMMKNLIKEG SVEEADDLFL SMEKSGCTAD SYMLNLIVRM
301: LLGKGEIVKA GNYISKIDAK SYSLEAKTVS LLISLFSGKG KYREHIGLLP AKYRFREEAA TVV
001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.