Factsheet for TraesCS1B01G072400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G054800.1	Wheat	cytosol	67.19	80.24
TraesCS1B01G073100.1	Wheat	cytosol	66.91	76.73
TraesCS1B01G075300.1	Wheat	cytosol	64.17	74.71
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	66.47	69.58
TraesCS1B01G072700.1	Wheat	cytosol	49.78	67.84
TraesCS1B01G073200.1	Wheat	cytosol	29.35	67.33
TraesCS6B01G341800.2	Wheat	cytosol	37.99	66.17
TraesCS1B01G085400.1	Wheat	cytosol	60.72	65.83
TraesCS1B01G084800.1	Wheat	cytosol	43.74	65.52
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	72.09	64.23
TraesCS1B01G072900.2	Wheat	mitochondrion	79.86	63.57
TraesCS2B01G126900.1	Wheat	cytosol	34.39	62.57
TraesCS1B01G039700.1	Wheat	cytosol	53.38	61.02
TraesCS1B01G092500.1	Wheat	mitochondrion	68.2	60.54
TraesCS1B01G085300.1	Wheat	mitochondrion	68.63	60.23
TraesCS1B01G038400.1	Wheat	cytosol	52.37	59.87
TraesCS1B01G071600.1	Wheat	mitochondrion	72.95	59.79
TraesCS1B01G085900.1	Wheat	mitochondrion	69.5	59.34
TraesCS1B01G038600.1	Wheat	cytosol	28.92	55.37
TraesCS1B01G072300.1	Wheat	plastid	45.18	55.28
TraesCS7B01G469500.1	Wheat	cytosol	44.46	54.98
TraesCS6B01G127200.1	Wheat	cytosol	27.19	54.94
TraesCS2B01G559900.1	Wheat	cytosol	42.73	54.8
TraesCS2B01G560300.1	Wheat	cytosol	44.75	54.66
TraesCS1B01G086000.1	Wheat	plastid	51.37	52.04
TraesCS1B01G039200.1	Wheat	mitochondrion	57.99	51.4
TraesCS1B01G038500.1	Wheat	mitochondrion	58.13	51.14
TraesCS1B01G039100.1	Wheat	mitochondrion	57.55	51.09
KXG35774	Sorghum	cytosol, mitochondrion	34.24	50.32
TraesCS1B01G092600.1	Wheat	plastid	36.4	48.94
Zm00001d007548_P001	Maize	plastid	56.4	48.16
Zm00001d007559_P001	Maize	plastid	56.4	47.98
Zm00001d007531_P001	Maize	plastid	56.12	47.91
TraesCS1B01G038200.1	Wheat	mitochondrion	43.6	47.87
TraesCS2B01G560700.1	Wheat	plastid	52.95	47.73
Zm00001d007534_P001	Maize	plastid	53.09	47.49
Zm00001d007555_P001	Maize	plastid	55.54	47.42
KXG28799	Sorghum	plastid	51.37	46.97
TraesCS6B01G127500.1	Wheat	cytosol	32.09	45.51
TraesCS1B01G038300.1	Wheat	plastid	35.68	45.42
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.21	44.65
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	31.37	43.17
TraesCS6B01G114300.1	Wheat	cytosol	24.03	42.93
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	26.04	41.8
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	26.33	41.69
TraesCS6B01G021600.1	Wheat	mitochondrion	42.45	41.2
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	42.3	41.12
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	42.16	40.98
Os04t0351333-00	Rice	cytosol	49.93	39.48
TraesCS1B01G315500.1	Wheat	mitochondrion	17.7	38.32
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	16.12	34.46
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	18.7	34.3
Os04t0349600-01	Rice	plastid	17.84	32.04
Solyc06g007280.2.1	Tomato	cytosol	11.51	31.37
Bra026884.1-P	Field mustard	cytosol	19.71	29.85
Solyc06g005220.2.1	Tomato	cytosol	17.41	29.8
KRH39054	Soybean	cytosol	21.15	29.58
Bra006187.1-P	Field mustard	plastid	12.23	29.21
Bra027636.1-P	Field mustard	cytosol	13.53	29.01
KRH39057	Soybean	cytosol	20.58	28.77
PGSC0003DMT400052977	Potato	cytosol	15.97	28.53
KRH39074	Soybean	cytosol	20.29	28.37
KRH39112	Soybean	cytosol	20.29	28.37
VIT_14s0081g00110.t01	Wine grape	cytosol	20.0	28.31
KRH39004	Soybean	cytosol	20.14	28.17
Bra027029.1-P	Field mustard	mitochondrion	9.78	27.98
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.99	27.67
Solyc06g007810.1.1	Tomato	cytosol	10.65	27.61
KRH39072	Soybean	cytosol	19.42	27.22
AT1G63330.2	Thale cress	cytosol	21.87	27.19
Bra036649.1-P	Field mustard	cytosol	15.11	26.85
PGSC0003DMT400008759	Potato	cytosol	12.23	26.65
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.28	26.53
KRH40513	Soybean	plastid	13.38	26.5
KRH09084	Soybean	plastid	19.28	26.22
KRH39066	Soybean	cytosol	20.86	26.13
CDX68679	Canola	cytosol	4.32	26.09
TraesCS6B01G129100.1	Wheat	cytosol, plastid	10.79	26.04
KRH09082	Soybean	cytosol	15.25	25.98
KRH08636	Soybean	cytosol	19.42	25.86
Bra026882.1-P	Field mustard	cytosol	19.86	25.84
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.27	25.66
AT5G16640.1	Thale cress	mitochondrion	18.56	25.6
VIT_14s0081g00120.t01	Wine grape	plastid	21.44	25.56
KRH08671	Soybean	cytosol, mitochondrion	20.29	25.5
PGSC0003DMT400025067	Potato	cytosol	17.41	25.42
KRH25652	Soybean	cytosol, golgi	19.57	25.19
PGSC0003DMT400025074	Potato	cytosol	20.0	25.18
KRH08607	Soybean	cytosol	20.29	25.13
KRH09154	Soybean	mitochondrion	20.0	25.0
KRH17148	Soybean	mitochondrion	19.57	24.95
AT1G62670.1	Thale cress	mitochondrion	22.59	24.92
PGSC0003DMT400008757	Potato	cytosol	17.84	24.9
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.42	24.86
KRH08639	Soybean	mitochondrion, plastid	20.14	24.78
KRH48615	Soybean	mitochondrion	19.42	24.77
KRH08277	Soybean	plastid	20.14	24.69
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.83	24.53
AT1G12300.1	Thale cress	mitochondrion	22.45	24.49
Bra026971.1-P	Field mustard	mitochondrion	22.01	24.32
KRH31646	Soybean	cytosol	18.13	24.32
AT1G63130.1	Thale cress	mitochondrion	22.01	24.29
KRH08628	Soybean	plastid	19.28	24.28
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.58	24.23
Bra031731.1-P	Field mustard	mitochondrion	17.7	24.21
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.58	24.15
AT1G62930.1	Thale cress	plastid	21.73	24.01
Bra026954.1-P	Field mustard	mitochondrion	22.45	24.0
AT1G62590.1	Thale cress	mitochondrion	21.87	23.97
KRH09121	Soybean	mitochondrion	18.42	23.97
VIT_14s0081g00270.t01	Wine grape	plastid	20.0	23.97
AT1G63080.3	Thale cress	mitochondrion	21.15	23.94
KRH39050	Soybean	mitochondrion	18.27	23.87
KRH40400	Soybean	plastid	19.71	23.74
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.69	23.63
KRH08625	Soybean	plastid	19.57	23.61
AT1G63070.1	Thale cress	mitochondrion	20.0	23.56
Solyc06g007740.1.1	Tomato	cytosol	20.0	23.56
Bra016762.1-P	Field mustard	mitochondrion	20.58	23.56
Bra036651.1-P	Field mustard	mitochondrion	18.13	23.55
Bra028267.1-P	Field mustard	mitochondrion	21.15	23.48
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.7	23.43
KRH41817	Soybean	mitochondrion	18.7	23.42
AT1G62910.1	Thale cress	mitochondrion	21.3	23.42
AT1G63400.1	Thale cress	cytosol, plastid	19.42	23.4
Bra026958.1-P	Field mustard	mitochondrion	21.3	23.23
AT1G63150.1	Thale cress	mitochondrion	21.01	23.21
AT1G62680.2	Thale cress	plastid	18.27	23.18
VIT_14s0030g02280.t01	Wine grape	plastid	18.7	23.17
AT3G16710.1	Thale cress	mitochondrion	16.83	23.08
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.3	22.98
Solyc06g007300.1.1	Tomato	extracellular	19.57	22.97
Bra027026.1-P	Field mustard	mitochondrion	17.27	22.94
PGSC0003DMT400056665	Potato	mitochondrion	19.42	22.92
PGSC0003DMT400053185	Potato	mitochondrion	19.42	22.88
Bra021192.1-P	Field mustard	plastid	16.55	22.82
AT1G62914.1	Thale cress	mitochondrion	17.27	22.73
PGSC0003DMT400052971	Potato	mitochondrion	19.28	22.6
AT5G41170.1	Thale cress	mitochondrion	17.12	22.58
AT1G64580.1	Thale cress	mitochondrion	16.98	22.56
PGSC0003DMT400008760	Potato	mitochondrion	18.99	22.53
PGSC0003DMT400056663	Potato	plastid	18.99	22.45
VIT_14s0030g02260.t01	Wine grape	cytosol	14.24	22.35
AT1G62720.1	Thale cress	mitochondrion	15.54	22.27
Solyc04g080120.1.1	Tomato	extracellular	19.57	22.22
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.29	22.07
PGSC0003DMT400053182	Potato	cytosol	18.99	22.04
KRH09095	Soybean	plastid	18.42	21.88
AT1G64583.1	Thale cress	mitochondrion	15.97	21.68
AT1G12700.2	Thale cress	cytosol	19.14	21.52
PGSC0003DMT400015293	Potato	mitochondrion	18.85	21.48
PGSC0003DMT400015298	Potato	mitochondrion	18.85	21.48
KRH09097	Soybean	plastid	17.99	21.44
AT1G06580.1	Thale cress	mitochondrion	15.4	21.4
Bra026401.1-P	Field mustard	plastid	16.4	21.31
Bra026957.1-P	Field mustard	mitochondrion	18.42	21.23
KRH08599	Soybean	cytosol, plastid	20.0	20.78
PGSC0003DMT400053556	Potato	mitochondrion	13.38	20.26
AT4G26800.2	Thale cress	mitochondrion, plastid	14.82	20.04
AT1G64100.2	Thale cress	cytosol	22.45	19.35
KRH09085	Soybean	mitochondrion	18.7	18.47
Bra027656.1-P	Field mustard	cytosol	24.46	18.07
Bra027726.1-P	Field mustard	mitochondrion	12.09	17.83
KRH12873	Soybean	cytosol	17.27	17.24
KRH39064	Soybean	cytosol	20.72	14.86
Bra016758.1-P	Field mustard	plastid	21.58	12.94

Protein Annotations

EnsemblPlants:TraesCS1B01G072400.1	EnsemblPlantsGene:TraesCS1B01G072400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:57016242..57018329

Molecular Weight (calculated)

76936.4 Da

IEP (calculated)

8.499

GRAVY (calculated)

0.032

Length

695 amino acids

Sequence
(BLAST)

001: MDCCCRASRP DLGLAFFGRL LRTGLKTNEI VASTFLKCLC YANRKEEAVN VLLHRMPELG CVPDAFSYSI VLKSLCDNNT SQRGLLQMMA KEGGGCSPNV
101: VAYSTVIHGF FKEGETGKAC SLFHQMMQQG VVPNVVTYNS IIDALCKARA MDKAELVLRQ MVANGAQPNE VTYTCMIHGY STSGRLKEAA KMFREMKSRG
201: LTPNTVTCGS LMTSLCKHGR SKEAREIFDS MTAKGHKPDI VSYRILLHGY ASEGCFADMI DLCNSMESNG IAADCRVFTI LIDAYAKRGM MDDAMHIFTE
301: MQQRGVSPNV VTYSTVISAL SRMGRLTDAM EKFNQMVALG VQPNIPVYWS LIQGFCMHGG LVKVKELVSQ MINKGIPRPN IVFFNSVING MCKEGRVMDA
401: HDIFDLVIDL GGRPDVITFN SLIDGYCLAR KLDKAFGMFN SMESVGVEPD IVTYSTLLDG YFKNRRINDG LALFREMPRK RIKPDIVTYG IMLDGLFRAG
501: RTVAARTMFH EMIESGITVD IPTYNIVLRG LCRNNCTDEA IALFQKLGAM SMKFNIAILN TMINAMYKVR RREEANNLFA AISTSGLVPN QSTYAVMIIN
601: LLKDGAVEHA SNMFSSMEKS GIVPSSRLIN GIIRLLLENG EIAKAGIYLS KVDGNSISLE ASTTSLMLSL FSRKGKYHED MKLLPAKYQF FDGCS

Best Arabidopsis Sequence Match ( AT1G62910.1 )
(BLAST)

001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALSLLKKME KGKIEADVVI YNTIIDGLCK YKHMDDALNL FTEMDNKGIR PDVFTYSSLI
301: SCLCNYGRWS DASRLLSDMI ERKINPNVVT FSALIDAFVK EGKLVEAEKL YDEMIKRSID PDIFTYSSLI NGFCMHDRLD EAKHMFELMI SKDCFPNVVT
401: YSTLIKGFCK AKRVEEGMEL FREMSQRGLV GNTVTYTTLI HGFFQARDCD NAQMVFKQMV SVGVHPNILT YNILLDGLCK NGKLAKAMVV FEYLQRSTME
501: PDIYTYNIMI EGMCKAGKVE DGWELFCNLS LKGVSPNVIA YNTMISGFCR KGSKEEADSL LKKMKEDGPL PNSGTYNTLI RARLRDGDRE ASAELIKEMR
601: SCGFAGDAST IGLVTNMLHD GRLDKSFLDM LS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62910 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.