Factsheet for TraesCS6B01G127500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G083300.1	Wheat	mitochondrion	77.14	84.75
TraesCS6D01G083400.1	Wheat	mitochondrion	85.1	84.58
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	80.2	81.2
TraesCS6B01G127200.1	Wheat	cytosol	55.71	79.36
HORVU6Hr1G017870.2	Barley	mitochondrion	47.76	78.0
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	63.27	71.59
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	66.94	64.95
TraesCS6B01G129100.1	Wheat	cytosol, plastid	32.45	55.21
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	42.24	47.15
TraesCS1B01G315500.1	Wheat	mitochondrion	30.82	47.04
TraesCS2B01G126900.1	Wheat	cytosol	35.92	46.07
TraesCS1B01G072300.1	Wheat	plastid	53.06	45.77
TraesCS1B01G092600.1	Wheat	plastid	45.31	42.94
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	27.96	42.15
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	31.02	40.11
TraesCS1B01G038200.1	Wheat	mitochondrion	50.0	38.7
TraesCS1B01G086000.1	Wheat	plastid	51.43	36.73
TraesCS1B01G073200.1	Wheat	cytosol	22.24	35.97
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	54.69	34.36
TraesCS1B01G072700.1	Wheat	cytosol	34.9	33.53
TraesCS7B01G469500.1	Wheat	cytosol	37.96	33.1
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	44.08	32.53
KXG28799	Sorghum	plastid	50.2	32.37
TraesCS1B01G072400.1	Wheat	cytosol	45.51	32.09
TraesCS1B01G085900.1	Wheat	mitochondrion	53.06	31.94
TraesCS1B01G038500.1	Wheat	mitochondrion	50.41	31.27
TraesCS1B01G039200.1	Wheat	mitochondrion	49.8	31.12
Solyc06g007280.2.1	Tomato	cytosol	16.12	30.98
TraesCS1B01G085300.1	Wheat	mitochondrion	50.0	30.93
TraesCS1B01G092500.1	Wheat	mitochondrion	48.78	30.52
Zm00001d007531_P001	Maize	plastid	50.61	30.47
Zm00001d007548_P001	Maize	plastid	50.41	30.34
TraesCS1B01G071600.1	Wheat	mitochondrion	52.45	30.31
Zm00001d007559_P001	Maize	plastid	50.41	30.23
TraesCS2B01G560700.1	Wheat	plastid	47.55	30.22
TraesCS1B01G039100.1	Wheat	mitochondrion	47.76	29.89
Zm00001d007555_P001	Maize	plastid	49.59	29.85
Zm00001d007534_P001	Maize	plastid	46.33	29.21
TraesCS1B01G072900.2	Wheat	mitochondrion	51.43	28.87
TraesCS6B01G021600.1	Wheat	mitochondrion	39.59	27.09
TraesCS1B01G038400.1	Wheat	cytosol	33.47	26.97
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	39.18	26.85
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	38.98	26.71
TraesCS1B01G075300.1	Wheat	cytosol	32.24	26.47
TraesCS1B01G039700.1	Wheat	cytosol	32.65	26.32
TraesCS1B01G085400.1	Wheat	cytosol	34.29	26.21
VIT_12s0028g02320.t01	Wine grape	mitochondrion	24.29	24.95
TraesCS2B01G559900.1	Wheat	cytosol	27.35	24.72
KRH40513	Soybean	plastid	17.55	24.5
TraesCS1B01G073100.1	Wheat	cytosol	30.0	24.26
Bra027029.1-P	Field mustard	mitochondrion	11.84	23.87
TraesCS2B01G560300.1	Wheat	cytosol	27.35	23.55
AT1G62914.1	Thale cress	mitochondrion	25.31	23.48
KRH08636	Soybean	cytosol	24.9	23.37
KRH39004	Soybean	cytosol	23.67	23.34
KRH39054	Soybean	cytosol	23.67	23.34
KRH39050	Soybean	mitochondrion	25.31	23.31
KRH39074	Soybean	cytosol	23.47	23.14
Bra036649.1-P	Field mustard	cytosol	18.37	23.02
KRH08639	Soybean	mitochondrion, plastid	26.53	23.01
KRH39057	Soybean	cytosol	23.27	22.94
KRH09084	Soybean	plastid	23.88	22.9
KRH39072	Soybean	cytosol	23.06	22.78
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	23.47	22.77
KRH17148	Soybean	mitochondrion	25.1	22.57
KRH39112	Soybean	cytosol	22.86	22.54
KRH08628	Soybean	plastid	25.31	22.46
KRH08277	Soybean	plastid	25.92	22.4
KRH08625	Soybean	plastid	26.12	22.22
KRH31646	Soybean	cytosol	23.47	22.2
AT1G63400.1	Thale cress	cytosol, plastid	26.12	22.18
AT1G63330.2	Thale cress	cytosol	25.31	22.18
KRH08607	Soybean	cytosol	25.31	22.1
PGSC0003DMT400053556	Potato	mitochondrion	20.61	22.0
VIT_14s0030g02280.t01	Wine grape	plastid	25.1	21.93
Bra027636.1-P	Field mustard	cytosol	14.49	21.91
AT5G16640.1	Thale cress	mitochondrion	22.45	21.83
KRH08671	Soybean	cytosol, mitochondrion	24.49	21.7
KRH40400	Soybean	plastid	25.51	21.66
KRH48615	Soybean	mitochondrion	24.08	21.65
Bra026971.1-P	Field mustard	mitochondrion	27.76	21.62
KRH41817	Soybean	mitochondrion	24.49	21.62
KRH09154	Soybean	mitochondrion	24.49	21.58
VIT_14s0081g00270.t01	Wine grape	plastid	25.51	21.55
AT1G12300.1	Thale cress	mitochondrion	27.96	21.51
AT1G12620.1	Thale cress	cytosol, mitochondrion	27.14	21.42
PGSC0003DMT400025087	Potato	endoplasmic reticulum	21.63	21.41
AT1G62670.1	Thale cress	mitochondrion	27.35	21.27
KRH39066	Soybean	cytosol	24.08	21.26
AT1G62930.1	Thale cress	plastid	27.14	21.14
Bra021192.1-P	Field mustard	plastid	21.63	21.03
PGSC0003DMT400025067	Potato	cytosol	20.41	21.01
Bra036651.1-P	Field mustard	mitochondrion	22.86	20.93
Bra026958.1-P	Field mustard	mitochondrion	27.14	20.88
AT1G63080.3	Thale cress	mitochondrion	26.12	20.85
PGSC0003DMT400052977	Potato	cytosol	16.53	20.82
AT1G63130.1	Thale cress	mitochondrion	26.73	20.79
KRH09121	Soybean	mitochondrion	22.65	20.79
Solyc06g007300.1.1	Tomato	extracellular	25.1	20.78
VIT_14s0081g00120.t01	Wine grape	plastid	24.69	20.75
KRH25652	Soybean	cytosol, golgi	22.86	20.74
AT1G64580.1	Thale cress	mitochondrion	22.04	20.65
Bra028267.1-P	Field mustard	mitochondrion	26.33	20.61
Bra026882.1-P	Field mustard	cytosol	22.45	20.6
VIT_14s0081g00110.t01	Wine grape	cytosol	20.61	20.57
AT1G62590.1	Thale cress	mitochondrion	26.53	20.5
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	21.84	20.38
AT3G22470.1	Thale cress	cytosol, mitochondrion	25.71	20.36
AT1G63070.1	Thale cress	mitochondrion	24.49	20.34
AT3G16710.1	Thale cress	mitochondrion	21.02	20.32
Bra027026.1-P	Field mustard	mitochondrion	21.63	20.27
Bra026884.1-P	Field mustard	cytosol	18.98	20.26
AT4G26800.2	Thale cress	mitochondrion, plastid	21.22	20.23
AT1G62720.1	Thale cress	mitochondrion	20.0	20.21
AT1G06580.1	Thale cress	mitochondrion	20.61	20.2
Solyc06g007740.1.1	Tomato	cytosol	24.29	20.17
Bra016762.1-P	Field mustard	mitochondrion	24.9	20.1
PGSC0003DMT400008757	Potato	cytosol	20.41	20.08
PGSC0003DMT400056665	Potato	mitochondrion	24.08	20.03
AT1G62910.1	Thale cress	mitochondrion	25.71	19.94
PGSC0003DMT400052971	Potato	mitochondrion	24.08	19.9
AT1G63150.1	Thale cress	mitochondrion	25.51	19.87
Bra026957.1-P	Field mustard	mitochondrion	24.29	19.73
PGSC0003DMT400056663	Potato	plastid	23.67	19.73
AT1G12775.1	Thale cress	cytosol, mitochondrion	25.92	19.72
Solyc06g005220.2.1	Tomato	cytosol	16.33	19.7
AT1G64583.1	Thale cress	mitochondrion	20.41	19.53
Bra025516.1-P	Field mustard	cytosol, mitochondrion	18.98	19.5
PGSC0003DMT400053185	Potato	mitochondrion	23.47	19.49
KRH09095	Soybean	plastid	23.27	19.49
PGSC0003DMT400025074	Potato	cytosol	21.84	19.38
KRH09097	Soybean	plastid	23.06	19.38
AT5G41170.1	Thale cress	mitochondrion	20.82	19.35
TraesCS6B01G114300.1	Wheat	cytosol	15.31	19.28
AT1G12700.2	Thale cress	cytosol	24.29	19.26
KXG35774	Sorghum	cytosol, mitochondrion	18.57	19.24
Bra026954.1-P	Field mustard	mitochondrion	25.51	19.23
AT1G62680.2	Thale cress	plastid	21.43	19.16
Bra031731.1-P	Field mustard	mitochondrion	19.8	19.09
VIT_14s0081g00280.t01	Wine grape	mitochondrion	24.9	19.09
Bra026401.1-P	Field mustard	plastid	20.82	19.07
Bra006187.1-P	Field mustard	plastid	11.22	18.9
PGSC0003DMT400053182	Potato	cytosol	22.65	18.53
Bra027726.1-P	Field mustard	mitochondrion	17.55	18.26
KRH09082	Soybean	cytosol	15.1	18.14
KRH08599	Soybean	cytosol, plastid	24.69	18.09
Bra027658.1-P	Field mustard	cytosol, mitochondrion	20.0	18.05
Solyc04g080120.1.1	Tomato	extracellular	22.45	17.97
TraesCS1B01G038300.1	Wheat	plastid	20.0	17.95
PGSC0003DMT400008760	Potato	mitochondrion	21.43	17.92
PGSC0003DMT400015293	Potato	mitochondrion	22.24	17.87
PGSC0003DMT400015298	Potato	mitochondrion	22.24	17.87
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.73	16.7
PGSC0003DMT400008759	Potato	cytosol	10.82	16.61
KRH09085	Soybean	mitochondrion	22.86	15.91
TraesCS1B01G084800.1	Wheat	cytosol	14.9	15.73
AT1G64100.2	Thale cress	cytosol	24.49	14.89
Bra027656.1-P	Field mustard	cytosol	27.14	14.13
KRH12873	Soybean	cytosol	19.8	13.94
Solyc06g007810.1.1	Tomato	cytosol	7.55	13.81
VIT_14s0030g02260.t01	Wine grape	cytosol	11.84	13.09
KRH39064	Soybean	cytosol	25.31	12.8
Bra016758.1-P	Field mustard	plastid	24.9	10.53
TraesCS6B01G341800.2	Wheat	cytosol	7.35	9.02
TraesCS1B01G038600.1	Wheat	cytosol	4.08	5.51
CDX68679	Canola	cytosol	0.2	0.87

Protein Annotations

EnsemblPlants:TraesCS6B01G127500.1	EnsemblPlantsGene:TraesCS6B01G127500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr6B:-:123415992..123417464

Molecular Weight (calculated)

54757.4 Da

IEP (calculated)

8.169

GRAVY (calculated)

0.021

Length

490 amino acids

Sequence
(BLAST)

001: MSRLQVRSFS NSVSSHANEL LDKLQGHLHS RTLRPDLVHQ LFDEMLRQPV PVSVRALNGL FAALARAPSS TICTDAPALA IDLFNRMARA GRRQVPAPTI
101: HTYSILIECC QRACRPDLGL AFFGRLLKTG IKTNAITYSS LLKCLCDMKR TEEALGVLLH RMPDDLPNAI SYSVILKSFC DSGRSQLVLD LLRMMAEKGS
201: DHSPSVVSYS LVIDGFFKEG EISKACNLLH EMMQQGVVPD VVTYNSFIDA LCKARAMEKA EVVLRSMVHN GVQPNAVTYS SLIQGYSTLG QLKEVARLLK
301: AMRSQGSMPG VVICSSVMDY LCKHGRIKDA EEIFYSMAVN GRKPDIVSYT IMLHGYAIEG SLVKMIDLCE LMARDGVVPD LRCFNILINA YAKYGMMDVA
401: MLFLEDMLKQ GVKPNEFTYL TVISAFCKMG RMDDAMEKFS EMIDMGVPVD TEVYMCMVEG YFNHGDSMKA EKFITKMKNR DIHHKLRKGN

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.