Factsheet for TraesCS1B01G085400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G341800.2	Wheat	cytosol	45.87	73.68
TraesCS1B01G075300.1	Wheat	cytosol	65.21	70.02
TraesCS1B01G084800.1	Wheat	cytosol	49.3	68.1
TraesCS1B01G073100.1	Wheat	cytosol	63.65	67.33
TraesCS1B01G085300.1	Wheat	mitochondrion	78.47	63.51
TraesCS1B01G072400.1	Wheat	cytosol	65.83	60.72
TraesCS1B01G038600.1	Wheat	cytosol	34.32	60.61
TraesCS1B01G039700.1	Wheat	cytosol	57.41	60.53
TraesCS1B01G038400.1	Wheat	cytosol	56.79	59.87
TraesCS2B01G126900.1	Wheat	cytosol	34.79	58.38
TraesCS2B01G559900.1	Wheat	cytosol	48.83	57.75
TraesCS2B01G560300.1	Wheat	cytosol	50.86	57.29
TraesCS1B01G072700.1	Wheat	cytosol	44.62	56.08
TraesCS1B01G085900.1	Wheat	mitochondrion	69.89	55.04
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	56.63	54.67
HORVU1Hr1G013810.1	Barley	plastid	70.2	53.64
TraesCS1B01G092500.1	Wheat	mitochondrion	63.81	52.23
TraesCS7B01G469500.1	Wheat	cytosol	44.46	50.71
KXG35774	Sorghum	cytosol, mitochondrion	36.97	50.11
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	60.37	49.62
TraesCS1B01G038500.1	Wheat	mitochondrion	60.37	48.99
TraesCS1B01G039100.1	Wheat	mitochondrion	59.28	48.53
TraesCS1B01G039200.1	Wheat	mitochondrion	59.28	48.47
TraesCS1B01G072900.2	Wheat	mitochondrion	65.37	48.0
TraesCS1B01G086000.1	Wheat	plastid	50.55	47.23
TraesCS2B01G560700.1	Wheat	plastid	54.6	45.4
TraesCS6B01G127200.1	Wheat	cytosol	24.18	45.06
TraesCS1B01G071600.1	Wheat	mitochondrion	59.44	44.93
Zm00001d007534_P001	Maize	plastid	53.67	44.27
TraesCS1B01G038300.1	Wheat	plastid	37.29	43.77
Zm00001d007548_P001	Maize	plastid	55.23	43.49
Zm00001d007559_P001	Maize	plastid	55.38	43.45
Zm00001d007555_P001	Maize	plastid	55.07	43.37
Zm00001d007531_P001	Maize	plastid	54.6	43.0
KXG28799	Sorghum	plastid	50.86	42.89
TraesCS1B01G038200.1	Wheat	mitochondrion	41.65	42.18
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	50.39	42.17
TraesCS1B01G073200.1	Wheat	cytosol	19.66	41.58
TraesCS6B01G114300.1	Wheat	cytosol	24.34	40.1
TraesCS6B01G021600.1	Wheat	mitochondrion	43.37	38.83
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	42.75	38.32
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	42.75	38.32
Os04t0351333-00	Rice	cytosol	51.48	37.54
TraesCS1B01G092600.1	Wheat	plastid	30.27	37.52
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	25.43	37.13
TraesCS1B01G072300.1	Wheat	plastid	32.45	36.62
TraesCS6B01G127500.1	Wheat	cytosol	26.21	34.29
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	26.68	33.86
Solyc06g007280.2.1	Tomato	cytosol	13.42	33.73
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	22.0	32.56
Solyc06g005220.2.1	Tomato	cytosol	19.97	31.53
PGSC0003DMT400052977	Potato	cytosol	19.03	31.36
Bra027636.1-P	Field mustard	cytosol	15.29	30.25
VIT_14s0081g00110.t01	Wine grape	cytosol	23.09	30.14
PGSC0003DMT400008759	Potato	cytosol	14.98	30.09
Solyc06g007810.1.1	Tomato	cytosol	12.32	29.48
KRH39057	Soybean	cytosol	22.0	28.37
KRH39004	Soybean	cytosol	21.84	28.17
KRH39112	Soybean	cytosol	21.84	28.17
KRH39054	Soybean	cytosol	21.37	27.57
KRH39072	Soybean	cytosol	21.22	27.42
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.28	27.25
KRH39074	Soybean	cytosol	21.06	27.16
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.37	27.13
KRH09082	Soybean	cytosol	17.16	26.96
Bra026884.1-P	Field mustard	cytosol	19.19	26.8
TraesCS1B01G315500.1	Wheat	mitochondrion	13.42	26.79
Os04t0349600-01	Rice	plastid	16.07	26.61
CDX68679	Canola	cytosol	4.68	26.09
KRH08636	Soybean	cytosol	21.22	26.05
KRH08671	Soybean	cytosol, mitochondrion	22.15	25.68
KRH48615	Soybean	mitochondrion	21.68	25.5
Bra006187.1-P	Field mustard	plastid	11.54	25.43
PGSC0003DMT400025067	Potato	cytosol	18.88	25.42
VIT_14s0081g00120.t01	Wine grape	plastid	23.09	25.39
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.5	25.25
KRH08628	Soybean	plastid	21.68	25.18
VIT_14s0081g00270.t01	Wine grape	plastid	22.78	25.17
KRH17148	Soybean	mitochondrion	21.37	25.14
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	14.82	25.07
KRH09084	Soybean	plastid	19.97	25.05
PGSC0003DMT400025074	Potato	cytosol	21.53	25.0
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	12.64	24.92
PGSC0003DMT400008757	Potato	cytosol	19.19	24.7
Bra027029.1-P	Field mustard	mitochondrion	9.36	24.69
KRH39066	Soybean	cytosol	21.37	24.68
KRH08607	Soybean	cytosol	21.53	24.6
KRH25652	Soybean	cytosol, golgi	20.59	24.44
KRH08639	Soybean	mitochondrion, plastid	21.53	24.42
Solyc06g007740.1.1	Tomato	cytosol	22.46	24.41
KRH40513	Soybean	plastid	13.26	24.22
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.81	24.19
KRH40400	Soybean	plastid	21.68	24.09
Bra031731.1-P	Field mustard	mitochondrion	19.03	24.02
VIT_14s0030g02260.t01	Wine grape	cytosol	16.54	23.93
Solyc06g007300.1.1	Tomato	extracellular	22.0	23.82
KRH08625	Soybean	plastid	21.37	23.78
KRH08277	Soybean	plastid	20.9	23.63
KRH09121	Soybean	mitochondrion	19.66	23.6
KRH09154	Soybean	mitochondrion	20.44	23.56
KRH39050	Soybean	mitochondrion	19.19	23.12
PGSC0003DMT400053185	Potato	mitochondrion	21.22	23.05
KRH31646	Soybean	cytosol	18.56	22.97
PGSC0003DMT400056665	Potato	mitochondrion	21.06	22.92
KRH41817	Soybean	mitochondrion	19.81	22.88
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.78	22.85
PGSC0003DMT400056663	Potato	plastid	20.9	22.79
PGSC0003DMT400052971	Potato	mitochondrion	21.06	22.77
PGSC0003DMT400008760	Potato	mitochondrion	20.75	22.7
AT1G63330.2	Thale cress	cytosol	19.66	22.54
Bra036649.1-P	Field mustard	cytosol	13.73	22.51
Bra026882.1-P	Field mustard	cytosol	18.72	22.47
VIT_14s0030g02280.t01	Wine grape	plastid	19.5	22.28
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.72	22.1
AT5G16640.1	Thale cress	mitochondrion	17.16	21.83
AT1G62930.1	Thale cress	plastid	21.22	21.62
KRH09097	Soybean	plastid	19.66	21.61
KRH09095	Soybean	plastid	19.66	21.54
AT1G12700.2	Thale cress	cytosol	20.75	21.52
AT1G12300.1	Thale cress	mitochondrion	21.37	21.51
Solyc04g080120.1.1	Tomato	extracellular	20.44	21.41
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.59	21.32
PGSC0003DMT400053182	Potato	cytosol	19.81	21.2
AT1G62670.1	Thale cress	mitochondrion	20.75	21.11
AT1G63130.1	Thale cress	mitochondrion	20.75	21.11
AT1G64580.1	Thale cress	mitochondrion	17.16	21.03
PGSC0003DMT400015293	Potato	mitochondrion	19.97	20.98
PGSC0003DMT400015298	Potato	mitochondrion	19.97	20.98
KRH08599	Soybean	cytosol, plastid	21.84	20.93
Bra016762.1-P	Field mustard	mitochondrion	19.81	20.92
Bra026971.1-P	Field mustard	mitochondrion	20.44	20.83
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.9	20.81
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.12	20.77
AT1G62910.1	Thale cress	mitochondrion	20.44	20.73
Bra026958.1-P	Field mustard	mitochondrion	20.59	20.72
PGSC0003DMT400053556	Potato	mitochondrion	14.82	20.7
AT1G63080.3	Thale cress	mitochondrion	19.81	20.68
AT3G16710.1	Thale cress	mitochondrion	16.22	20.51
Bra021192.1-P	Field mustard	plastid	16.07	20.44
AT1G63070.1	Thale cress	mitochondrion	18.72	20.34
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.13	20.34
AT1G64583.1	Thale cress	mitochondrion	16.22	20.31
Bra026954.1-P	Field mustard	mitochondrion	20.59	20.31
AT1G62590.1	Thale cress	mitochondrion	19.97	20.19
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.44	20.16
Bra028267.1-P	Field mustard	mitochondrion	19.66	20.13
Bra026957.1-P	Field mustard	mitochondrion	18.88	20.07
AT1G63150.1	Thale cress	mitochondrion	19.66	20.03
AT1G06580.1	Thale cress	mitochondrion	15.6	20.0
AT1G62720.1	Thale cress	mitochondrion	15.13	20.0
Bra036651.1-P	Field mustard	mitochondrion	16.69	20.0
AT1G62680.2	Thale cress	plastid	16.69	19.53
AT5G41170.1	Thale cress	mitochondrion	15.91	19.35
Bra027026.1-P	Field mustard	mitochondrion	15.76	19.31
AT1G63400.1	Thale cress	cytosol, plastid	17.16	19.06
AT1G64100.2	Thale cress	cytosol	23.24	18.49
Bra027726.1-P	Field mustard	mitochondrion	13.57	18.47
KRH12873	Soybean	cytosol	19.5	17.96
AT1G62914.1	Thale cress	mitochondrion	14.51	17.61
KRH09085	Soybean	mitochondrion	19.34	17.61
Bra026401.1-P	Field mustard	plastid	14.04	16.82
AT4G26800.2	Thale cress	mitochondrion, plastid	13.26	16.54
Bra027656.1-P	Field mustard	cytosol	22.62	15.41
KRH39064	Soybean	cytosol	22.62	14.96
TraesCS6B01G129100.1	Wheat	cytosol, plastid	5.77	12.85
Bra016758.1-P	Field mustard	plastid	19.81	10.96

Protein Annotations

EnsemblPlants:TraesCS1B01G085400.1	EnsemblPlantsGene:TraesCS1B01G085400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF874	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1B:+:70185997..70187922

Molecular Weight (calculated)

71181.0 Da

IEP (calculated)

7.175

GRAVY (calculated)

0.061

Length

641 amino acids

Sequence
(BLAST)

001: MSKLGCVPDA ISYNTVLKSL CDNSSSQRAL DLLQMMTKGG GCSPDVVTYN TVIHGFLQEG EVSKACDRYH EMVQQGVLHD VVTYNSILDA LCKAGAMDKA
101: ELFLRQMVDD DIRPNEVTYN AMIHGYSTLG QWKRATQMFR EMTSRGLAPN IVTWSSLMTS LCKHGRSKEA AEIFHSMAAK GHKPNIVTYR VLLHGYAAEG
201: FFADMIDLFN SIANNGIVPD CHVFNILINA YAKCGMMDEA MSMLTEMRGQ GVSPDVFTYA TVIAALCRMG RLTDVMDNFN RMIGKGVQPS KVVYHSLIQG
301: FCTLGDLVKV KKLIFEITDK GIPHPNIVFF SSIMHSLCNE GRVMDAHHIF DLVIDIGERP DLITFNMLID GYCLVSKMEE ALRLLDSMVS AGIKPNVITY
401: NTLINGYCRS GRLDDGVILF REMLHTRVKP NTVTYNIILD GLFRAGRTVA AKKMFHEMIE TGTAVSISTY SIVLGGLCRN NCTDEAIAFF QKLVAMNVKF
501: DIVILNTMIK AMYKVQRREE ANDLFASLPA CGLVPNASTY GVVIQNLLKE GSLEEADNMF SSMEKSGCAP SSRLVNDITR KLLEKGEIVK AGNYMSKVDG
601: KIISFEASTT SLLLSLFSEK GKYREQLQLL PAKYQFFEGV I

Best Arabidopsis Sequence Match ( AT1G62930.1 )
(BLAST)

001: MTSCVHLGIV ASQSKKMSLA KRFAQLRKAS PLFSLRGVYF SAASYDYREK LSRNVLLDLK LDDAVDLFGE MVQSRPLPSI VEFNKLLSAI AKMNKFDLVI
101: SLGERMQNLR ISYDLYSYNI LINCFCRRSQ LPLALAVLGK MMKLGYEPDI VTLSSLLNGY CHGKRISEAV ALVDQMFVME YQPNTVTFNT LIHGLFLHNK
201: ASEAVALIDR MVARGCQPDL FTYGTVVNGL CKRGDIDLAL SLLKKMEKGK IEADVVIYTT IIDALCNYKN VNDALNLFTE MDNKGIRPNV VTYNSLIRCL
301: CNYGRWSDAS RLLSDMIERK INPNVVTFSA LIDAFVKEGK LVEAEKLYDE MIKRSIDPDI FTYSSLINGF CMHDRLDEAK HMFELMISKD CFPNVVTYNT
401: LIKGFCKAKR VEEGMELFRE MSQRGLVGNT VTYNTLIQGL FQAGDCDMAQ KIFKKMVSDG VPPDIITYSI LLDGLCKYGK LEKALVVFEY LQKSKMEPDI
501: YTYNIMIEGM CKAGKVEDGW DLFCSLSLKG VKPNVIIYTT MISGFCRKGL KEEADALFRE MKEDGTLPNS GTYNTLIRAR LRDGDKAASA ELIKEMRSCG
601: FVGDASTISM VINMLHDGRL EKSYLEMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62930, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.