Factsheet for TraesCS6B01G021600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	89.66	89.79
TraesCSU01G089800.1	Wheat	mitochondrion	42.74	87.18
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	84.78	84.9
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	38.27	84.31
HORVU1Hr1G018190.2	Barley	cytosol	30.73	77.19
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	40.78	77.04
HORVU6Hr1G002890.6	Barley	cytosol, plastid	77.09	69.43
TraesCS6B01G114300.1	Wheat	cytosol	32.26	59.38
Os10t0497366-00	Rice	mitochondrion	29.89	53.37
Os10t0495100-01	Rice	cytosol, mitochondrion	34.22	53.15
OQU88594	Sorghum	cytosol	37.43	51.34
Os08t0248400-01	Rice	mitochondrion	31.42	51.14
Os10t0497300-01	Rice	mitochondrion	56.42	50.88
Os10t0495200-01	Rice	mitochondrion	55.31	50.64
Os10t0497432-01	Rice	mitochondrion	18.58	50.0
TraesCS2B01G126900.1	Wheat	cytosol	26.54	49.74
Zm00001d018982_P001	Maize	mitochondrion	24.16	49.43
Zm00001d009733_P001	Maize	cytosol	54.75	49.31
Os10t0501700-00	Rice	cytosol	31.15	49.12
EER95949	Sorghum	mitochondrion	44.27	47.81
Os08t0107700-01	Rice	cytosol, mitochondrion	24.72	47.33
Os10t0499500-01	Rice	mitochondrion	33.24	47.04
Os08t0107800-01	Rice	mitochondrion	40.22	46.15
KXG34536	Sorghum	mitochondrion	36.59	45.8
TraesCS1B01G038400.1	Wheat	cytosol	38.83	45.72
Os08t0110200-01	Rice	mitochondrion	50.56	45.36
TraesCS6B01G127200.1	Wheat	cytosol	21.23	44.19
TraesCS1B01G072700.1	Wheat	cytosol	31.15	43.73
TraesCS1B01G075300.1	Wheat	cytosol	36.31	43.55
TraesCS1B01G085400.1	Wheat	cytosol	38.83	43.37
TraesCS1B01G039700.1	Wheat	cytosol	36.73	43.26
TraesCS1B01G072400.1	Wheat	cytosol	41.2	42.45
TraesCS2B01G560300.1	Wheat	cytosol	33.66	42.35
TraesCS1B01G038600.1	Wheat	cytosol	21.37	42.15
TraesCS1B01G073100.1	Wheat	cytosol	35.61	42.08
TraesCS2B01G559900.1	Wheat	cytosol	31.7	41.88
TraesCS1B01G084800.1	Wheat	cytosol	27.09	41.81
TraesCS1B01G092600.1	Wheat	plastid	30.17	41.78
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	25.14	41.57
TraesCS1B01G085900.1	Wheat	mitochondrion	47.21	41.52
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	38.41	41.42
TraesCS2B01G560700.1	Wheat	plastid	44.41	41.25
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	25.28	41.23
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	29.05	41.19
TraesCS1B01G038500.1	Wheat	mitochondrion	45.39	41.14
TraesCS1B01G039100.1	Wheat	mitochondrion	44.97	41.12
TraesCS1B01G039200.1	Wheat	mitochondrion	44.83	40.94
TraesCS7B01G469500.1	Wheat	cytosol	32.12	40.93
TraesCS1B01G038200.1	Wheat	mitochondrion	35.89	40.6
TraesCS1B01G073200.1	Wheat	cytosol	17.18	40.59
Zm00001d009735_P001	Maize	cytosol	54.61	40.19
TraesCS1B01G085300.1	Wheat	mitochondrion	44.13	39.9
TraesCS6B01G127500.1	Wheat	cytosol	27.09	39.59
TraesCS1B01G092500.1	Wheat	mitochondrion	42.88	39.21
TraesCS1B01G086000.1	Wheat	plastid	37.01	38.63
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	42.04	38.59
TraesCS6B01G341800.2	Wheat	cytosol	21.37	38.35
TraesCS1B01G072300.1	Wheat	plastid	30.31	38.2
TraesCS1B01G072900.2	Wheat	mitochondrion	45.81	37.57
TraesCS1B01G315500.1	Wheat	mitochondrion	16.62	37.07
TraesCS1B01G071600.1	Wheat	mitochondrion	43.3	36.56
Solyc06g007280.2.1	Tomato	cytosol	12.99	36.47
TraesCS1B01G038300.1	Wheat	plastid	27.51	36.08
KRH40513	Soybean	plastid	15.64	31.91
Solyc06g005220.2.1	Tomato	cytosol	17.88	31.53
PGSC0003DMT400052977	Potato	cytosol	16.9	31.11
Bra036649.1-P	Field mustard	cytosol	16.48	30.18
KRH39004	Soybean	cytosol	20.81	29.98
KRH39054	Soybean	cytosol	20.81	29.98
KRH39057	Soybean	cytosol	20.67	29.78
KRH39050	Soybean	mitochondrion	22.07	29.7
AT1G63330.2	Thale cress	cytosol	23.18	29.7
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.69	29.56
KRH39072	Soybean	cytosol	20.39	29.44
KRH39112	Soybean	cytosol	20.39	29.38
KRH39074	Soybean	cytosol	20.25	29.18
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.53	29.11
Solyc06g007810.1.1	Tomato	cytosol	10.89	29.1
KRH31646	Soybean	cytosol	20.95	28.96
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	21.23	28.95
KRH41817	Soybean	mitochondrion	22.35	28.83
Bra026884.1-P	Field mustard	cytosol	18.44	28.76
KRH08636	Soybean	cytosol	20.95	28.74
Bra027636.1-P	Field mustard	cytosol	12.99	28.7
Bra027029.1-P	Field mustard	mitochondrion	9.64	28.4
VIT_14s0081g00110.t01	Wine grape	cytosol	19.41	28.31
KRH48615	Soybean	mitochondrion	21.51	28.26
KRH09084	Soybean	plastid	20.11	28.18
TraesCS6B01G129100.1	Wheat	cytosol, plastid	11.31	28.12
PGSC0003DMT400008757	Potato	cytosol	19.55	28.11
AT1G62930.1	Thale cress	plastid	24.58	27.98
Solyc06g007740.1.1	Tomato	cytosol	23.04	27.97
Bra026882.1-P	Field mustard	cytosol	20.81	27.9
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.27	27.88
PGSC0003DMT400025074	Potato	cytosol	21.37	27.72
KRH08628	Soybean	plastid	21.09	27.36
KRH08607	Soybean	cytosol	21.37	27.27
PGSC0003DMT400008759	Potato	cytosol	12.15	27.27
Solyc06g007300.1.1	Tomato	extracellular	22.49	27.2
PGSC0003DMT400053185	Potato	mitochondrion	22.35	27.12
VIT_14s0081g00120.t01	Wine grape	plastid	22.07	27.1
AT3G22470.1	Thale cress	cytosol, mitochondrion	23.32	26.98
KRH17148	Soybean	mitochondrion	20.53	26.97
AT1G63070.1	Thale cress	mitochondrion	22.21	26.95
PGSC0003DMT400025067	Potato	cytosol	17.88	26.89
AT1G63130.1	Thale cress	mitochondrion	23.6	26.83
AT1G62590.1	Thale cress	mitochondrion	23.74	26.81
KRH08671	Soybean	cytosol, mitochondrion	20.67	26.76
KRH08639	Soybean	mitochondrion, plastid	21.09	26.73
KRH39066	Soybean	cytosol	20.67	26.67
AT5G16640.1	Thale cress	mitochondrion	18.72	26.59
AT1G62910.1	Thale cress	mitochondrion	23.46	26.58
VIT_14s0081g00270.t01	Wine grape	plastid	21.51	26.55
Bra026958.1-P	Field mustard	mitochondrion	23.6	26.53
PGSC0003DMT400056665	Potato	mitochondrion	21.79	26.49
KRH08277	Soybean	plastid	20.95	26.45
KRH09154	Soybean	mitochondrion	20.53	26.44
KRH08625	Soybean	plastid	21.23	26.39
AT1G63080.3	Thale cress	mitochondrion	22.63	26.38
PGSC0003DMT400056663	Potato	plastid	21.65	26.36
KRH40400	Soybean	plastid	21.23	26.34
KRH25652	Soybean	cytosol, golgi	19.83	26.3
AT1G12620.1	Thale cress	cytosol, mitochondrion	22.77	26.25
AT1G62670.1	Thale cress	mitochondrion	23.04	26.19
AT1G62720.1	Thale cress	mitochondrion	17.74	26.19
AT1G62914.1	Thale cress	mitochondrion	19.27	26.14
AT1G63150.1	Thale cress	mitochondrion	22.91	26.07
Bra026971.1-P	Field mustard	mitochondrion	22.91	26.07
KRH09121	Soybean	mitochondrion	19.41	26.03
AT1G63400.1	Thale cress	cytosol, plastid	20.95	26.0
KRH09082	Soybean	cytosol	14.8	25.98
Bra016762.1-P	Field mustard	mitochondrion	21.93	25.86
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.04	25.82
Bra031731.1-P	Field mustard	mitochondrion	18.3	25.79
Bra028267.1-P	Field mustard	mitochondrion	22.49	25.72
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.41	25.6
AT1G12300.1	Thale cress	mitochondrion	22.63	25.43
PGSC0003DMT400008760	Potato	mitochondrion	20.81	25.43
Bra036651.1-P	Field mustard	mitochondrion	18.99	25.42
VIT_14s0030g02280.t01	Wine grape	plastid	19.83	25.31
PGSC0003DMT400052971	Potato	mitochondrion	20.95	25.3
AT1G64583.1	Thale cress	mitochondrion	18.02	25.2
Solyc04g080120.1.1	Tomato	extracellular	21.51	25.16
Bra006187.1-P	Field mustard	plastid	10.2	25.09
PGSC0003DMT400015293	Potato	mitochondrion	21.37	25.08
PGSC0003DMT400015298	Potato	mitochondrion	21.37	25.08
AT1G64580.1	Thale cress	mitochondrion	18.3	25.05
Bra027026.1-P	Field mustard	mitochondrion	18.3	25.05
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.62	24.95
Bra026954.1-P	Field mustard	mitochondrion	22.63	24.92
AT3G16710.1	Thale cress	mitochondrion	17.6	24.85
PGSC0003DMT400053556	Potato	mitochondrion	15.92	24.84
PGSC0003DMT400053182	Potato	cytosol	20.67	24.71
Bra021192.1-P	Field mustard	plastid	17.32	24.6
AT1G12700.2	Thale cress	cytosol	21.09	24.43
AT1G06580.1	Thale cress	mitochondrion	17.04	24.4
CDX68679	Canola	cytosol	3.91	24.35
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.62	24.24
OQU88581	Sorghum	cytosol	36.73	24.2
AT1G62680.2	Thale cress	plastid	18.44	24.09
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.65	24.07
AT5G41170.1	Thale cress	mitochondrion	17.6	23.91
Bra026957.1-P	Field mustard	mitochondrion	19.97	23.71
KRH09097	Soybean	plastid	19.27	23.67
KRH09095	Soybean	plastid	19.13	23.42
AT4G26800.2	Thale cress	mitochondrion, plastid	16.48	22.96
KRH08599	Soybean	cytosol, plastid	21.23	22.72
Bra027726.1-P	Field mustard	mitochondrion	14.94	22.72
Bra026401.1-P	Field mustard	plastid	16.34	21.87
AT1G64100.2	Thale cress	cytosol	24.02	21.34
VIT_14s0030g02260.t01	Wine grape	cytosol	12.71	20.54
KRH09085	Soybean	mitochondrion	19.41	19.74
KRH12873	Soybean	cytosol	18.02	18.53
Bra027656.1-P	Field mustard	cytosol	23.74	18.07
KRH39064	Soybean	cytosol	22.21	16.41
Bra016758.1-P	Field mustard	plastid	22.07	13.63

Protein Annotations

EnsemblPlants:TraesCS6B01G021600.1	EnsemblPlantsGene:TraesCS6B01G021600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:13651771..13653921

Molecular Weight (calculated)

80173.8 Da

IEP (calculated)

5.927

GRAVY (calculated)

-0.008

Length

716 amino acids

Sequence
(BLAST)

001: MSRRFVPVGR RILEQNIKAR YHAGDIGTQD ALHLFDELLQ VVGRSSIHAI NCLLTVVGHD CPALGVSLFN RVARSKVAPC SITYAILVDC CCRAGRQDLG
101: HTAMGHIIKM GFTADAMITF SHLLKAICAE KKTSYAMDIV LRIMPEFNCI PNIFSYNILF KGLCNERRSQ EALELINIMV EDERGCCRPD VVTYNTVIDG
201: LLKEGEVGKA YSLFCEMLCQ GVLPDVVTCS LIISGMCKLH AMDKAEEVLQ QMLDRGILPD VATYNSLIHG YYSLGQCEEV DRIFKEMTTN GAQPDIVTYN
301: IQMDYLCKNG RCAEARKIFY SMISLGQKPT VTTYNILLHG YAMERSFHDM NCLIELMDDN GISPDHYGYN ILISAYAKEK MVDEVMHIFT KMRQKGLNPD
401: AVSYGTVIDL LSRIGRMDDA MSQFDQMITE GLAPDIIVFS SLISGFCSCG KWEKVHELFS EMLDRGICPD RVFFNTVMDH LWKNGRVMEA QHVSDLMVHM
501: GVKPFVRDYN TLIHGYCLVG KMDEGRKLLD NMFSIGLKPD DFTYSILIDG YSKNGRIDDA LIIVREMLDG KVKPSIITFN IMIGALLKGG RKEEAKDLFN
601: GIWAKGLVPD VVTYSLMIQK LIEEGSLQES DDLFLSMEKN GCAADSRMLN GIVRSLLQKG EMPRAGTYLS KIDERSFTLE ASTASLLAAV ASGGKGQEYK
701: ELLPEKYHSF LEQGTD

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.