Factsheet for TraesCSU01G089800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	60.11	83.4
TraesCSU01G090200.1	Wheat	cytosol	83.76	66.52
TraesCSU01G089700.1	Wheat	mitochondrion	84.05	61.2
HORVU1Hr1G018190.2	Barley	cytosol	46.44	57.19
Os10t0497432-01	Rice	mitochondrion	37.32	49.25
Os08t0107700-01	Rice	cytosol, mitochondrion	47.86	44.92
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	90.03	44.2
Zm00001d018982_P001	Maize	mitochondrion	43.02	43.14
TraesCS6B01G021600.1	Wheat	mitochondrion	87.18	42.74
Os08t0248400-01	Rice	mitochondrion	52.71	42.05
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	80.06	39.36
Os10t0495100-01	Rice	cytosol, mitochondrion	51.57	39.26
Os10t0499500-01	Rice	mitochondrion	52.14	36.17
OQU88594	Sorghum	cytosol	51.57	34.67
HORVU6Hr1G002890.6	Barley	cytosol, plastid	78.35	34.59
EER95949	Sorghum	mitochondrion	57.83	30.62
Os10t0497366-00	Rice	mitochondrion	34.47	30.17
Os08t0107800-01	Rice	mitochondrion	46.72	26.28
Solyc06g007280.2.1	Tomato	cytosol	18.8	25.88
KXG34536	Sorghum	mitochondrion	41.88	25.7
Os10t0495200-01	Rice	mitochondrion	52.42	23.53
Os10t0497300-01	Rice	mitochondrion	52.71	23.3
Zm00001d009733_P001	Maize	cytosol	50.71	22.39
Os10t0501700-00	Rice	cytosol	26.78	20.7
KRH40513	Soybean	plastid	20.23	20.23
Os08t0110200-01	Rice	mitochondrion	44.73	19.67
Zm00001d009735_P001	Maize	cytosol	50.43	18.19
AT1G62914.1	Thale cress	mitochondrion	27.35	18.18
VIT_12s0028g02320.t01	Wine grape	mitochondrion	23.93	17.61
KRH41817	Soybean	mitochondrion	26.78	16.94
KRH39050	Soybean	mitochondrion	25.36	16.73
KRH09084	Soybean	plastid	23.93	16.44
KRH39004	Soybean	cytosol	23.08	16.3
KRH39057	Soybean	cytosol	23.08	16.3
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	24.22	16.19
KRH39054	Soybean	cytosol	22.79	16.1
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	23.08	16.04
AT1G63080.3	Thale cress	mitochondrion	27.92	15.96
AT1G63400.1	Thale cress	cytosol, plastid	26.21	15.94
PGSC0003DMT400025074	Potato	cytosol	24.79	15.76
KRH08639	Soybean	mitochondrion, plastid	25.36	15.75
AT1G63330.2	Thale cress	cytosol	25.07	15.74
AT1G62930.1	Thale cress	plastid	28.21	15.74
AT1G62910.1	Thale cress	mitochondrion	28.21	15.66
Solyc06g007740.1.1	Tomato	cytosol	26.21	15.59
KRH08628	Soybean	plastid	24.5	15.58
AT1G63130.1	Thale cress	mitochondrion	27.92	15.56
KRH39072	Soybean	cytosol	21.94	15.52
VIT_14s0030g02280.t01	Wine grape	plastid	24.5	15.33
KRH39112	Soybean	cytosol	21.65	15.29
Solyc06g005220.2.1	Tomato	cytosol	17.66	15.27
AT1G63070.1	Thale cress	mitochondrion	25.64	15.25
KRH48615	Soybean	mitochondrion	23.65	15.23
AT1G06580.1	Thale cress	mitochondrion	21.65	15.2
KRH08636	Soybean	cytosol	22.51	15.13
AT1G63150.1	Thale cress	mitochondrion	27.07	15.1
KRH31646	Soybean	cytosol	22.22	15.06
PGSC0003DMT400053556	Potato	mitochondrion	19.66	15.03
Bra016762.1-P	Field mustard	mitochondrion	25.93	14.99
PGSC0003DMT400056663	Potato	plastid	25.07	14.97
PGSC0003DMT400056665	Potato	mitochondrion	25.07	14.94
AT1G62670.1	Thale cress	mitochondrion	26.78	14.92
KRH39074	Soybean	cytosol	21.08	14.89
AT3G22470.1	Thale cress	cytosol, mitochondrion	26.21	14.86
Bra036649.1-P	Field mustard	cytosol	16.52	14.83
AT1G12620.1	Thale cress	cytosol, mitochondrion	26.21	14.81
KRH09121	Soybean	mitochondrion	22.51	14.79
AT1G12300.1	Thale cress	mitochondrion	26.78	14.76
VIT_14s0081g00120.t01	Wine grape	plastid	24.5	14.75
PGSC0003DMT400053185	Potato	mitochondrion	24.79	14.75
KRH08277	Soybean	plastid	23.65	14.64
KRH08607	Soybean	cytosol	23.36	14.62
Bra026958.1-P	Field mustard	mitochondrion	26.5	14.6
AT1G62590.1	Thale cress	mitochondrion	26.21	14.51
VIT_14s0081g00270.t01	Wine grape	plastid	23.93	14.48
Bra026971.1-P	Field mustard	mitochondrion	25.93	14.47
AT1G12775.1	Thale cress	cytosol, mitochondrion	26.5	14.44
KRH39066	Soybean	cytosol	22.79	14.41
Solyc06g007300.1.1	Tomato	extracellular	24.22	14.36
AT5G16640.1	Thale cress	mitochondrion	20.51	14.29
KRH08671	Soybean	cytosol, mitochondrion	22.51	14.29
VIT_14s0081g00280.t01	Wine grape	mitochondrion	25.93	14.24
KRH40400	Soybean	plastid	23.36	14.21
AT4G26800.2	Thale cress	mitochondrion, plastid	20.8	14.2
KRH09095	Soybean	plastid	23.65	14.19
AT1G64580.1	Thale cress	mitochondrion	21.08	14.15
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.94	14.14
KRH09097	Soybean	plastid	23.36	14.07
KRH08625	Soybean	plastid	23.08	14.06
Bra026882.1-P	Field mustard	cytosol	21.37	14.04
KRH09154	Soybean	mitochondrion	22.22	14.03
Bra027658.1-P	Field mustard	cytosol, mitochondrion	21.65	14.0
KRH17148	Soybean	mitochondrion	21.65	13.95
Bra028267.1-P	Field mustard	mitochondrion	24.79	13.9
VIT_14s0081g00110.t01	Wine grape	cytosol	19.37	13.85
Bra026954.1-P	Field mustard	mitochondrion	25.64	13.85
PGSC0003DMT400008760	Potato	mitochondrion	22.79	13.65
Bra036651.1-P	Field mustard	mitochondrion	20.8	13.64
Bra026957.1-P	Field mustard	mitochondrion	23.08	13.43
AT1G12700.2	Thale cress	cytosol	23.65	13.43
AT1G62720.1	Thale cress	mitochondrion	18.52	13.4
Bra027026.1-P	Field mustard	mitochondrion	19.94	13.38
Solyc04g080120.1.1	Tomato	extracellular	23.08	13.24
AT3G16710.1	Thale cress	mitochondrion	19.09	13.21
Bra031731.1-P	Field mustard	mitochondrion	19.09	13.19
PGSC0003DMT400015293	Potato	mitochondrion	22.79	13.11
PGSC0003DMT400015298	Potato	mitochondrion	22.79	13.11
Bra021192.1-P	Field mustard	plastid	18.8	13.1
AT1G64583.1	Thale cress	mitochondrion	19.09	13.09
PGSC0003DMT400008757	Potato	cytosol	18.52	13.05
PGSC0003DMT400025067	Potato	cytosol	17.66	13.03
PGSC0003DMT400052971	Potato	mitochondrion	21.65	12.82
Bra025516.1-P	Field mustard	cytosol, mitochondrion	17.38	12.79
KRH25652	Soybean	cytosol, golgi	19.66	12.78
Bra026884.1-P	Field mustard	cytosol	16.52	12.64
PGSC0003DMT400053182	Potato	cytosol	20.8	12.19
AT5G41170.1	Thale cress	mitochondrion	18.23	12.14
KRH08599	Soybean	cytosol, plastid	23.08	12.11
Bra026401.1-P	Field mustard	plastid	17.95	11.78
AT1G62680.2	Thale cress	plastid	18.23	11.68
KRH09082	Soybean	cytosol	13.39	11.52
Bra027636.1-P	Field mustard	cytosol	10.54	11.42
PGSC0003DMT400052977	Potato	cytosol	12.54	11.31
AT1G64100.2	Thale cress	cytosol	25.93	11.29
Bra027726.1-P	Field mustard	mitochondrion	15.1	11.25
KRH09085	Soybean	mitochondrion	22.22	11.08
Bra027029.1-P	Field mustard	mitochondrion	7.41	10.7
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.53	10.39
KRH12873	Soybean	cytosol	20.51	10.34
Bra027656.1-P	Field mustard	cytosol	25.93	9.67
OQU88581	Sorghum	cytosol	29.63	9.57
KRH39064	Soybean	cytosol	24.22	8.77
Bra016758.1-P	Field mustard	plastid	25.64	7.77
Bra006187.1-P	Field mustard	plastid	5.98	7.22
PGSC0003DMT400008759	Potato	cytosol	5.7	6.27
VIT_14s0030g02260.t01	Wine grape	cytosol	7.41	5.87
TraesCS6A01G014600.1	Wheat	cytosol	5.98	5.32
Solyc06g007810.1.1	Tomato	cytosol	0.28	0.37
CDX68679	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCSU01G089800.1	EnsemblPlantsGene:TraesCSU01G089800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chrUn:+:79937107..79938236

Molecular Weight (calculated)

39026.8 Da

IEP (calculated)

7.683

GRAVY (calculated)

0.118

Length

351 amino acids

Sequence
(BLAST)

001: MSRRFVPVGR RILEQNIKAR YHAGDIGTED ALHLFDELLQ VAGRSSIHAI NCLLTVVCRD CPALGVSLFN RVARSKVAPS SITYAILVDC CCRAGRLDLG
101: HTAMGHIIKT GFAAEAIVNF NHLLKAICAE NKTSYAMDIV LRIMPMFNCV PNIFSYSILF KGLCNEKRSQ EALELINMMV EDGGSCRPDV VTYNTVIDGL
201: LKEGEVGKAY SLFCEMLRQG VSPDAVTCSS IISGMCKLHA MDKAEEVLQQ MLDRRILPNV ATYNSLIHGY YLLGQCEEVD RIFKEMSRNG VQPNVVTYNI
301: QMDYLCKSGR CAEARKIFDS MISLGQKPNV YTYSVLLHGS SCLQHTHICI C

Best Arabidopsis Sequence Match ( AT1G12775.1 )
(BLAST)

001: MVRMMIRRLS SQASRFVQPR LLETGTLRIA LINCPNELLF CCERGFSTFS DRNLSYRDKL SSGLVGIKAD DAVDLFRDMI QSRPLPTVID FNRLFSAIAK
101: TKQYELVLAL CKQMESKGIA HSIYTLSIMI NCFCRCRKLS YAFSTMGKIM KLGYEPDTVI FNTLLNGLCL ECRVSEALEL VDRMVEMGHK PTLITLNTLV
201: NGLCLNGKVS DAVVLIDRMV ETGFQPNEVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKDGSLD NAFNLFNEME IKGFKADIIT
301: YNTLIGGFCN AGRWDDGAKL LRDMIKRKIS PNVVTFSVLI DSFVKEGKLR EADQLLKEMM QRGIAPNTIT YNSLIDGFCK ENRLEEAIQM VDLMISKGCD
401: PDIMTFNILI NGYCKANRID DGLELFREMS LRGVIANTVT YNTLVQGFCQ SGKLEVAKKL FQEMVSRRVR PDIVSYKILL DGLCDNGELE KALEIFGKIE
501: KSKMELDIGI YMIIIHGMCN ASKVDDAWDL FCSLPLKGVK LDARAYNIMI SELCRKDSLS KADILFRKMT EEGHAPDELT YNILIRAHLG DDDATTAAEL
601: IEEMKSSGFP ADVSTVKMVI NMLSSGELDK SFLDMLSTTR ASLK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12775, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.