Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G148100.1 | Wheat | nucleus | 88.42 | 91.15 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 84.53 | 86.61 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 78.34 | 79.21 |
| Os03t0596900-01 | Rice | nucleus | 38.22 | 54.48 |
| EER91265 | Sorghum | nucleus | 33.73 | 52.4 |
| Zm00001d013757_P010 | Maize | nucleus | 33.33 | 51.15 |
| Zm00001d033159_P001 | Maize | nucleus | 21.06 | 47.2 |
| GSMUA_Achr9P09240_001 | Banana | nucleus | 11.78 | 38.94 |
| GSMUA_Achr6P35030_001 | Banana | nucleus | 19.26 | 36.48 |
| GSMUA_Achr4P23560_001 | Banana | nucleus | 19.06 | 35.63 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 11.08 | 31.9 |
| Solyc10g006000.2.1 | Tomato | nucleus | 16.87 | 30.51 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 17.76 | 29.72 |
| KRG98507 | Soybean | nucleus | 20.56 | 28.03 |
| KRH46360 | Soybean | nucleus | 19.96 | 27.03 |
| CDX94304 | Canola | nucleus | 11.58 | 26.54 |
| Solyc07g065490.2.1 | Tomato | nucleus | 16.77 | 26.5 |
| TraesCS3D01G429200.1 | Wheat | nucleus | 12.97 | 26.42 |
| CDY06563 | Canola | nucleus | 17.96 | 26.2 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 17.56 | 25.77 |
| AT4G26630.1 | Thale cress | nucleus | 19.06 | 25.03 |
| KRH46364 | Soybean | nucleus | 19.86 | 24.66 |
| CDY28645 | Canola | nucleus | 19.46 | 24.59 |
| AT5G55660.1 | Thale cress | nucleus | 19.06 | 24.55 |
| Bra027748.1-P | Field mustard | nucleus | 4.29 | 24.43 |
| CDY20754 | Canola | nucleus | 18.86 | 23.8 |
| KRG98502 | Soybean | nucleus | 17.27 | 23.7 |
| Bra035582.1-P | Field mustard | nucleus | 18.46 | 23.3 |
| CDX89318 | Canola | nucleus | 16.17 | 23.01 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 19.76 | 22.89 |
| CDY17352 | Canola | extracellular, vacuole | 18.86 | 22.83 |
| Bra026415.1-P | Field mustard | nucleus | 18.06 | 21.68 |
| CDX97358 | Canola | nucleus | 19.46 | 16.08 |
| Bra010432.1-P | Field mustard | nucleus | 17.27 | 15.3 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G153300.1 | EnsemblPlantsGene:TraesCS4D01G153300 | Gene3D:1.10.10.60 | InterPro:DEK_C | ncoils:Coil | PANTHER:PTHR13468 |
| PANTHER:PTHR13468:SF8 | PFAM:PF08766 | SEG:seg | SUPFAM:SSF109715 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4D:+:192731910..192741377
Molecular Weight (calculated)
109469.0 Da
IEP (calculated)
4.650
GRAVY (calculated)
-1.196
Length
1002 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTGADLAPVM ELKAVANGGT PTEVVASDKK DNTKMEEAGE SKDVAVANTN ADQQNKASEN GAKGSSDDDA KMEEAEDAKE DDVGAVKQAG TEDVKSGDSA
0101: DAKEGNGANA AEHEDSKTAA IEDVVAKEDD NTKSAEHKDS KMVIVEDADA KEDDKAAKAA EHEDSKTAGI EDVVAMEDDN TKSAEYKDSK MVIVEDANAN
0201: EDDKAKAVEH EDSKAAGIEY TVAKEDANTK SAEHKDSKMV IVEDADAKED DKAKAAEHDD HRTGGVAAER KDHRTGGVED ADANEDISAK AEECKVGNMN
0301: TVDNADVKED EDANEDIGAK AEECKVGNMN TVDNADVKED EDANAAEHED AKMVDVDDAD AKEDYGTKVA EHEDVKMGAV EDIDAKEDNN TKAAEHHDII
0401: MGVVEHADVK EDNSSNVAEC VDVKMAEAET KPGDAELEDK GHKEEMDVNT EVKKGPKDAD QCGSEMHDEL NGQGKNGAAR QQENKAEEMS DDDSQGEVEV
0501: EEKGSSDKKE EGGDGKANEN EEKLEKESAN KEGKDGKVTE EEVGEADKNV EENQEETPKN KRARSSRDRR QRQDKKQHGS KSREAKSLLN TPSPYGIDRP
0601: QRERKIVERL VEVIDKEPNR SFVVEKGRGT PLKDIPSVAQ RLTRKKPADL KFLHNVLFGR KGKTVDFKGH ILQFSGFVWH ESDEKQRAKA KEKLDKCMKD
0701: MLVDLCWLLA IPVPKTNIRK EDIVAKLLDF IAEPHAMPDS GLSDDQGSNS RKRKRGGGSS SKTSDITPKR SKKKFADDIS PRRKQALEYD TDEDVKSDSE
0801: EDADESHDEQ EDGYDSAEEK ASRKSSEVKY SAGRKKAAAG STHRTSPPRT ASKTAGKTSP SKGSKEKESP DESAKVFSRK KKPIISKHTP SSEKVIEENK
0901: SSGKEAMKSK GESAEGGLPS KAELKKTIIG ILKKVDFNTS TFSDILKKLD DHYKIDLTAR KGAIKIMIQE ELTKLSEQED DDQDKNADAK KKQSRHRAKV
1001: TG
0101: DAKEGNGANA AEHEDSKTAA IEDVVAKEDD NTKSAEHKDS KMVIVEDADA KEDDKAAKAA EHEDSKTAGI EDVVAMEDDN TKSAEYKDSK MVIVEDANAN
0201: EDDKAKAVEH EDSKAAGIEY TVAKEDANTK SAEHKDSKMV IVEDADAKED DKAKAAEHDD HRTGGVAAER KDHRTGGVED ADANEDISAK AEECKVGNMN
0301: TVDNADVKED EDANEDIGAK AEECKVGNMN TVDNADVKED EDANAAEHED AKMVDVDDAD AKEDYGTKVA EHEDVKMGAV EDIDAKEDNN TKAAEHHDII
0401: MGVVEHADVK EDNSSNVAEC VDVKMAEAET KPGDAELEDK GHKEEMDVNT EVKKGPKDAD QCGSEMHDEL NGQGKNGAAR QQENKAEEMS DDDSQGEVEV
0501: EEKGSSDKKE EGGDGKANEN EEKLEKESAN KEGKDGKVTE EEVGEADKNV EENQEETPKN KRARSSRDRR QRQDKKQHGS KSREAKSLLN TPSPYGIDRP
0601: QRERKIVERL VEVIDKEPNR SFVVEKGRGT PLKDIPSVAQ RLTRKKPADL KFLHNVLFGR KGKTVDFKGH ILQFSGFVWH ESDEKQRAKA KEKLDKCMKD
0701: MLVDLCWLLA IPVPKTNIRK EDIVAKLLDF IAEPHAMPDS GLSDDQGSNS RKRKRGGGSS SKTSDITPKR SKKKFADDIS PRRKQALEYD TDEDVKSDSE
0801: EDADESHDEQ EDGYDSAEEK ASRKSSEVKY SAGRKKAAAG STHRTSPPRT ASKTAGKTSP SKGSKEKESP DESAKVFSRK KKPIISKHTP SSEKVIEENK
0901: SSGKEAMKSK GESAEGGLPS KAELKKTIIG ILKKVDFNTS TFSDILKKLD DHYKIDLTAR KGAIKIMIQE ELTKLSEQED DDQDKNADAK KKQSRHRAKV
1001: TG
001: MGEEDTKVIV EPTANGTSSL QKTSDAISGK EVQENASGKE VQESKKEEDT GLEKMEIDDE GKQHEGESET GDKEVEVTEE EKKDVGEDKE QPEADKMDED
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:F4K4Y5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.