Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G262000.1 | Wheat | nucleus | 95.24 | 95.24 |
| TraesCS6D01G242700.1 | Wheat | nucleus | 94.44 | 94.44 |
| HORVU6Hr1G066610.2 | Barley | cytosol, nucleus | 84.92 | 72.79 |
| EES05711 | Sorghum | cytosol | 61.11 | 59.23 |
| Zm00001d051492_P001 | Maize | cytosol | 54.76 | 55.65 |
| TraesCS2B01G476700.1 | Wheat | cytosol, nucleus, plastid | 44.44 | 45.53 |
| GSMUA_Achr5P12630_001 | Banana | cytosol | 28.57 | 38.71 |
| Solyc01g088660.2.1 | Tomato | cytosol, mitochondrion, nucleus | 29.37 | 37.37 |
| PGSC0003DMT400004241 | Potato | cytosol | 28.57 | 36.36 |
| TraesCS2B01G476400.1 | Wheat | cytosol, mitochondrion, nucleus | 21.43 | 35.53 |
| Bra007517.1-P | Field mustard | cytosol | 24.6 | 35.23 |
| CDY41184 | Canola | cytosol | 24.6 | 35.23 |
| TraesCS2B01G476100.1 | Wheat | cytosol | 20.63 | 34.21 |
| CDX71827 | Canola | cytosol, nucleus, plastid | 23.81 | 34.09 |
| KRH66418 | Soybean | plastid | 30.95 | 33.91 |
| KRH48855 | Soybean | nucleus, plastid | 30.95 | 33.91 |
| VIT_15s0021g00940.t01 | Wine grape | nucleus | 26.98 | 33.66 |
| Bra000358.1-P | Field mustard | nucleus | 24.6 | 32.98 |
| CDX83422 | Canola | nucleus | 24.6 | 32.98 |
| CDY48248 | Canola | nucleus | 23.81 | 32.97 |
| Bra004855.1-P | Field mustard | cytosol | 23.81 | 32.97 |
| CDX74676 | Canola | cytosol | 23.81 | 32.97 |
| TraesCS2B01G474800.1 | Wheat | cytosol | 24.6 | 32.29 |
| TraesCS2B01G476500.1 | Wheat | cytosol | 24.6 | 32.29 |
| TraesCS2B01G474900.1 | Wheat | cytosol | 23.81 | 32.26 |
| CDX95609 | Canola | cytosol, mitochondrion, nucleus | 23.81 | 31.91 |
| TraesCS6B01G289400.1 | Wheat | extracellular | 26.98 | 31.78 |
| TraesCS2B01G475700.1 | Wheat | cytosol | 19.05 | 31.58 |
| TraesCS2B01G476600.1 | Wheat | cytosol | 23.81 | 31.25 |
| AT2G44670.1 | Thale cress | cytosol, nucleus, plastid | 23.02 | 31.18 |
| TraesCS2B01G476000.1 | Wheat | cytosol | 23.81 | 30.61 |
| TraesCS2B01G475600.1 | Wheat | cytosol | 23.81 | 30.61 |
| TraesCS2B01G475800.1 | Wheat | cytosol | 23.02 | 30.21 |
| TraesCS2B01G475300.1 | Wheat | cytosol | 23.02 | 30.21 |
| TraesCS2B01G476300.1 | Wheat | cytosol | 23.02 | 29.59 |
| TraesCS2B01G475100.1 | Wheat | cytosol | 21.43 | 29.03 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 31.75 | 28.78 |
| CDY30481 | Canola | nucleus | 21.43 | 28.72 |
| CDY23451 | Canola | nucleus | 21.43 | 28.72 |
| Bra037639.1-P | Field mustard | nucleus | 21.43 | 28.72 |
| TraesCS2B01G474700.1 | Wheat | cytosol | 23.81 | 28.57 |
| TraesCS2B01G476800.1 | Wheat | nucleus | 32.54 | 28.47 |
| TraesCS2B01G475500.1 | Wheat | cytosol | 21.43 | 28.12 |
| TraesCS2B01G475200.1 | Wheat | cytosol | 21.43 | 28.12 |
| TraesCS2B01G475000.1 | Wheat | cytosol | 22.22 | 28.0 |
| TraesCS7B01G288100.2 | Wheat | cytosol | 27.78 | 27.34 |
| TraesCS2B01G475400.1 | Wheat | cytosol | 20.63 | 27.08 |
| TraesCS2B01G476200.1 | Wheat | nucleus | 19.84 | 26.04 |
| TraesCS6B01G289100.1 | Wheat | nucleus | 30.95 | 25.66 |
| TraesCS2B01G475900.1 | Wheat | cytosol | 20.63 | 22.03 |
| TraesCS2B01G476900.1 | Wheat | plastid | 27.78 | 20.47 |
| GSMUA_Achr2P10380_001 | Banana | cytosol | 30.16 | 15.26 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G289300.1 | EnsemblPlantsGene:TraesCS6B01G289300 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR007650 | InterPro:IPR013088 | InterPro:Zf-FLZ_dom | InterPro:Znf_NHR/GATA | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF69 |
| PFAM:PF04570 | PFscan:PS51795 | SEG:seg | MapMan:27.3.3 | : | : |
Description
No Description!
Coordinates
chr6B:-:520546275..520546733
Molecular Weight (calculated)
14441.6 Da
IEP (calculated)
7.982
GRAVY (calculated)
-0.987
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDFYYFPSS LETSEIVHRG FLPVVHSSPR NRGSPSPRPR RGFRDDASEL GHHYLDACFR CGRTLAGNKD IFMYRGDTPF CSEECRQQQI DTDEAAEKRS
101: KNSAAATTTE QQSQRQSSHR VPVWAR
101: KNSAAATTTE QQSQRQSSHR VPVWAR
001: MEVSMRKPYF IEEEDDGFVS LSEMEAGVSS PSCYNYPQSY YYNHHHHQYS VSSPRSGKFH DFRFDNSYYG YGQPHFLDSC FLCKKRLGDN RDIFMYRGDT
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA
Arabidopsis Description
Senescence-associated family protein (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8VZM9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.