Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44670.1 | CDX85250 | AT3G29160.1 | 21798944 |
| AT2G44670.1 | CDX86386 | AT3G29160.1 | 21798944 |
| AT2G44670.1 | CDY04058 | AT3G29160.1 | 21798944 |
| AT2G44670.1 | CDY44405 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30481 | Canola | nucleus | 96.81 | 96.81 |
| CDX95609 | Canola | cytosol, mitochondrion, nucleus | 89.36 | 89.36 |
| CDX83422 | Canola | nucleus | 87.23 | 87.23 |
| CDX74676 | Canola | cytosol | 84.04 | 86.81 |
| CDY48248 | Canola | nucleus | 82.98 | 85.71 |
| AT2G44670.1 | Thale cress | cytosol, nucleus, plastid | 84.04 | 84.95 |
| CDX71827 | Canola | cytosol, nucleus, plastid | 62.77 | 67.05 |
| CDY41184 | Canola | cytosol | 62.77 | 67.05 |
| VIT_15s0021g00940.t01 | Wine grape | nucleus | 54.26 | 50.49 |
| KRH66418 | Soybean | plastid | 57.45 | 46.96 |
| KRH48855 | Soybean | nucleus, plastid | 57.45 | 46.96 |
| PGSC0003DMT400004241 | Potato | cytosol | 47.87 | 45.45 |
| Solyc01g088660.2.1 | Tomato | cytosol, mitochondrion, nucleus | 45.74 | 43.43 |
| GSMUA_Achr5P12630_001 | Banana | cytosol | 42.55 | 43.01 |
| CDY38416 | Canola | nucleus | 48.94 | 36.51 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 46.81 | 31.65 |
| CDX78788 | Canola | nucleus | 50.0 | 30.92 |
| CDY09610 | Canola | nucleus | 48.94 | 27.38 |
| CDX90460 | Canola | nucleus | 48.94 | 27.22 |
| CDY40586 | Canola | nucleus | 45.74 | 27.22 |
| TraesCS2A01G454800.1 | Wheat | cytosol, nucleus, plastid | 34.04 | 26.02 |
| HORVU2Hr1G104960.1 | Barley | cytosol, nucleus, plastid | 34.04 | 26.02 |
| TraesCS2D01G455000.1 | Wheat | cytosol, nucleus, plastid | 34.04 | 26.02 |
| TraesCS2B01G476700.1 | Wheat | cytosol, nucleus, plastid | 34.04 | 26.02 |
| EES05711 | Sorghum | cytosol | 35.11 | 25.38 |
| CDY72627 | Canola | cytosol, nucleus | 45.74 | 25.29 |
| Os04t0586000-00 | Rice | nucleus | 34.04 | 25.2 |
| Zm00001d002523_P001 | Maize | nucleus | 34.04 | 25.0 |
| EES12738 | Sorghum | cytosol, nucleus, plastid | 34.04 | 24.81 |
| CDY12406 | Canola | nucleus | 45.74 | 23.63 |
| CDX77736 | Canola | nucleus | 45.74 | 23.37 |
| CDY33512 | Canola | nucleus | 44.68 | 22.95 |
| Zm00001d051492_P001 | Maize | cytosol | 29.79 | 22.58 |
| TraesCS6A01G262000.1 | Wheat | nucleus | 29.79 | 22.22 |
| TraesCS6D01G242700.1 | Wheat | nucleus | 29.79 | 22.22 |
| TraesCS6B01G289300.1 | Wheat | nucleus | 28.72 | 21.43 |
| CDY43446 | Canola | nucleus | 38.3 | 20.57 |
| GSMUA_Achr2P10380_001 | Banana | cytosol | 52.13 | 19.68 |
| HORVU6Hr1G066610.2 | Barley | cytosol, nucleus | 27.66 | 17.69 |
Protein Annotations
| EnsemblPlants:CDY23451 | EnsemblPlantsGene:GSBRNA2T00022069001 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF73 |
| PFAM:PF04570 | PFscan:PS51795 | ProteinID:CDY23451 | ProteinID:CDY23451.1 | SEG:seg | UniParc:UPI0004EC022C |
| UniProt:A0A078GDI9 | MapMan:27.3.3 | : | : | : | : |
Description
BnaC04g49790DBnaC04g49790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDI9]
Coordinates
chrLK032143:+:529020..529820
Molecular Weight (calculated)
10626.5 Da
IEP (calculated)
8.656
GRAVY (calculated)
-0.711
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MASHYKSFFG SEEPHFLESC SLCRKHIGLN SDIFMYRGDK AFCSKECREE QIESDEAKER SWRLSSRSLR KKSSEAAKDS AAGKTVRTGT LVVA
1: MASYYSGFLG CEEPHFLESC SLCRKHLGLN SDIFMYRGDK AFCSNECREE QIESDEAKER KWKKSSRSLR KNSSETKESA AGNTVRTGTL VVA
Arabidopsis Description
At2g44670/F16B22.16 [Source:UniProtKB/TrEMBL;Acc:O80506]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.