CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007517.1-P	Field mustard	cytosol	97.73	97.73
CDY41184	Canola	cytosol	97.73	97.73
CDY23451	Canola	nucleus	67.05	62.77
CDX83422	Canola	nucleus	65.91	61.7
CDX95609	Canola	cytosol, mitochondrion, nucleus	65.91	61.7
CDY30481	Canola	nucleus	65.91	61.7
CDX74676	Canola	cytosol	62.5	60.44
CDY48248	Canola	nucleus	60.23	58.24
PGSC0003DMT400004241	Potato	cytosol	53.41	47.47
GSMUA_Achr5P12630_001	Banana	cytosol	48.86	46.24
VIT_15s0021g00940.t01	Wine grape	nucleus	52.27	45.54
Solyc01g088660.2.1	Tomato	cytosol, mitochondrion, nucleus	51.14	45.45
KRH66418	Soybean	plastid	53.41	40.87
KRH48855	Soybean	nucleus, plastid	53.41	40.87
CDY38416	Canola	nucleus	45.45	31.75
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	46.59	29.5
CDX78788	Canola	nucleus	46.59	26.97
TraesCS2A01G454800.1	Wheat	cytosol, nucleus, plastid	36.36	26.02
TraesCS2B01G476700.1	Wheat	cytosol, nucleus, plastid	36.36	26.02
TraesCS2D01G455000.1	Wheat	cytosol, nucleus, plastid	36.36	26.02
HORVU2Hr1G104960.1	Barley	cytosol, nucleus, plastid	36.36	26.02
EES12738	Sorghum	cytosol, nucleus, plastid	37.5	25.58
Zm00001d002523_P001	Maize	nucleus	36.36	25.0
CDY40586	Canola	nucleus	44.32	24.68
Os04t0586000-00	Rice	nucleus	35.23	24.41
EES05711	Sorghum	cytosol	35.23	23.85
TraesCS6B01G289300.1	Wheat	nucleus	34.09	23.81
CDY09610	Canola	nucleus	45.45	23.81
CDX90460	Canola	nucleus	45.45	23.67
TraesCS6D01G242700.1	Wheat	nucleus	32.95	23.02
TraesCS6A01G262000.1	Wheat	nucleus	32.95	23.02
CDY72627	Canola	cytosol, nucleus	44.32	22.94
Zm00001d051492_P001	Maize	cytosol	31.82	22.58
CDY12406	Canola	nucleus	44.32	21.43
CDX77736	Canola	nucleus	44.32	21.2
CDY33512	Canola	nucleus	43.18	20.77
HORVU6Hr1G066610.2	Barley	cytosol, nucleus	34.09	20.41
CDY43446	Canola	nucleus	38.64	19.43
GSMUA_Achr2P10380_001	Banana	cytosol	52.27	18.47

Protein Annotations

EnsemblPlants:CDX71827	EnsemblPlantsGene:GSBRNA2T00155549001	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF73
PFAM:PF04570	PFscan:PS51795	ProteinID:CDX71827	ProteinID:CDX71827.1	SEG:seg	UniParc:UPI0004EB83BD
MapMan:27.3.3	:	:	:	:	:

Description

BnaC08g30470D

Coordinates

chrLK031795:-:748677..749358

Molecular Weight (calculated)

10214.0 Da

IEP (calculated)

7.922

GRAVY (calculated)

-0.818

Length

88 amino acids

Sequence
(BLAST)

1: MDSYYVRFVE NDEPHFLESC SLCRKTLSLN SDIFMYRGDM AFCSQECRQE QIESDEKKAK RWRKESSSSR SKNSVAGKGV RSETLVVS

Best Arabidopsis Sequence Match ( AT2G44670.1 )
(BLAST)

1: MASYYSGFLG CEEPHFLESC SLCRKHLGLN SDIFMYRGDK AFCSNECREE QIESDEAKER KWKKSSRSLR KNSSETKESA AGNTVRTGTL VVA

Arabidopsis Description

At2g44670/F16B22.16 [Source:UniProtKB/TrEMBL;Acc:O80506]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.