Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040173.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY38416 | Canola | nucleus | 76.97 | 92.86 |
| CDX90460 | Canola | nucleus | 84.87 | 76.33 |
| CDY09610 | Canola | nucleus | 82.89 | 75.0 |
| AT4G17670.1 | Thale cress | nucleus | 75.0 | 71.7 |
| CDY40586 | Canola | nucleus | 63.82 | 61.39 |
| CDX77736 | Canola | nucleus | 69.08 | 57.07 |
| CDY72627 | Canola | cytosol, nucleus | 63.16 | 56.47 |
| CDY33512 | Canola | nucleus | 67.76 | 56.28 |
| CDY12406 | Canola | nucleus | 65.79 | 54.95 |
| CDY43446 | Canola | nucleus | 61.84 | 53.71 |
| CDY48248 | Canola | nucleus | 30.26 | 50.55 |
| CDX95609 | Canola | cytosol, mitochondrion, nucleus | 30.92 | 50.0 |
| CDY23451 | Canola | nucleus | 30.92 | 50.0 |
| CDX83422 | Canola | nucleus | 30.92 | 50.0 |
| CDX74676 | Canola | cytosol | 29.61 | 49.45 |
| CDY30481 | Canola | nucleus | 30.26 | 48.94 |
| KRH77270 | Soybean | nucleus | 48.68 | 47.44 |
| Solyc06g061010.2.1 | Tomato | plastid | 42.11 | 47.06 |
| CDX71827 | Canola | cytosol, nucleus, plastid | 26.97 | 46.59 |
| CDY41184 | Canola | cytosol | 26.97 | 46.59 |
| VIT_02s0012g00280.t01 | Wine grape | nucleus | 48.03 | 46.5 |
| KRH28217 | Soybean | nucleus | 48.03 | 45.91 |
| KRH57558 | Soybean | plastid | 50.66 | 45.03 |
| PGSC0003DMT400068381 | Potato | nucleus | 43.42 | 44.9 |
| KRH04277 | Soybean | nucleus, plastid | 50.66 | 43.26 |
| Solyc08g077480.2.1 | Tomato | nucleus | 50.0 | 40.21 |
| GSMUA_Achr11P... | Banana | cytosol | 34.87 | 37.06 |
| GSMUA_Achr8P14880_001 | Banana | nucleus | 34.21 | 36.11 |
Protein Annotations
| EnsemblPlants:CDX78788 | EnsemblPlantsGene:GSBRNA2T00131251001 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | ncoils:Coil | PANTHER:PTHR33059 |
| PANTHER:PTHR33059:SF73 | PFAM:PF04570 | PFscan:PS51795 | ProteinID:CDX78788 | ProteinID:CDX78788.1 | SEG:seg |
| UniParc:UPI0002545CC7 | MapMan:27.3.3 | : | : | : | : |
Description
BnaA01g08550D
Coordinates
chrLK031816:-:41081..41851
Molecular Weight (calculated)
17677.5 Da
IEP (calculated)
8.897
GRAVY (calculated)
-1.090
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSRKPYFIE EAEMDAGVST PCYKNMNQYH PQSYYNYHQN SPRSAVVPGK FHYYRADNSY FGQQSLPHFL DSCSLCKKRL GDNRDIFMYR GDTPFCSEEC
101: REEQINKDEV KEKKRNLSSS VKAMRRNEKR SSSSSPTRSR DYALHTGTVV AA
101: REEQINKDEV KEKKRNLSSS VKAMRRNEKR SSSSSPTRSR DYALHTGTVV AA
001: MEVSMRKPYF IEEEDDGFVS LSEMEAGVSS PSCYNYPQSY YYNHHHHQYS VSSPRSGKFH DFRFDNSYYG YGQPHFLDSC FLCKKRLGDN RDIFMYRGDT
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA
Arabidopsis Description
Senescence-associated family protein (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8VZM9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.