Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400068383 | Potato | plastid | 53.06 | 58.65 |
| PGSC0003DMT400004695 | Potato | nucleus | 57.82 | 46.7 |
| CDY38416 | Canola | nucleus | 39.46 | 46.03 |
| AT4G17670.1 | Thale cress | nucleus | 48.98 | 45.28 |
| PGSC0003DMT400004241 | Potato | cytosol | 29.93 | 44.44 |
| Bra012651.1-P | Field mustard | nucleus | 51.02 | 44.38 |
| CDY09610 | Canola | nucleus | 50.34 | 44.05 |
| CDX90460 | Canola | nucleus | 50.34 | 43.79 |
| Bra024966.1-P | Field mustard | nucleus | 52.38 | 43.5 |
| Bra040173.1-P | Field mustard | nucleus | 44.9 | 43.42 |
| CDX78788 | Canola | nucleus | 44.9 | 43.42 |
| CDY40586 | Canola | nucleus | 46.26 | 43.04 |
| AT5G47060.2 | Thale cress | nucleus | 51.7 | 42.94 |
| CDX77736 | Canola | nucleus | 51.02 | 40.76 |
| Bra017509.1-P | Field mustard | nucleus | 48.98 | 40.68 |
| CDY43446 | Canola | nucleus | 48.3 | 40.57 |
| CDY33512 | Canola | nucleus | 50.34 | 40.44 |
| CDY72627 | Canola | cytosol, nucleus | 46.26 | 40.0 |
| CDY12406 | Canola | nucleus | 48.3 | 39.01 |
| Bra022099.1-P | Field mustard | nucleus | 48.3 | 39.01 |
| GSMUA_Achr8P14880_001 | Banana | nucleus | 36.73 | 37.5 |
| GSMUA_Achr11P... | Banana | cytosol | 32.65 | 33.57 |
Protein Annotations
| EntrezGene:102601330 | MapMan:27.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR007650 | UniProt:M1CIZ3 | PFAM:PF04570 | EnsemblPlantsGene:PGSC0003DMG400026591 | PGSC:PGSC0003DMG400026591 | EnsemblPlants:PGSC0003DMT400068381 |
| PFscan:PS51795 | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF73 | UniParc:UPI000294B91B | RefSeq:XP_006361166.1 | InterPro:Zf-FLZ_dom |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026591]
Coordinates
chr6:-:44330259..44331052
Molecular Weight (calculated)
16710.9 Da
IEP (calculated)
8.499
GRAVY (calculated)
-0.542
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MESATRRKRP CFINDGLVSV AQMGTEISTN NHNSLISRRT IFKNLTFDSS ISSPKLPARI EQQQPHFLDS CFLCNKPIAH NRDIFMYRGD IPFCSEECRQ
101: EQIDMDEAKE EKLNLSTSIK ALRIKSTSPT NTTQDYPLRI RGSVVAA
101: EQIDMDEAKE EKLNLSTSIK ALRIKSTSPT NTTQDYPLRI RGSVVAA
001: MELSSRKPYF IEEEEEENLA SSLSEMEAGF SGNNNNSNNH GNPQNGVVSS SRFSYGRLNS LRNSQSYYYN QYSVSSPRSV VSGRFHDFRF DIQQPHFLDS
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9FGQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.