Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024966.1-P | Field mustard | nucleus | 80.79 | 80.79 |
| CDY33512 | Canola | nucleus | 82.49 | 79.78 |
| CDX77736 | Canola | nucleus | 82.49 | 79.35 |
| CDY40586 | Canola | nucleus | 68.93 | 77.22 |
| CDY12406 | Canola | nucleus | 77.97 | 75.82 |
| Bra022099.1-P | Field mustard | nucleus | 76.27 | 74.18 |
| CDY43446 | Canola | nucleus | 71.75 | 72.57 |
| Bra017509.1-P | Field mustard | nucleus | 72.32 | 72.32 |
| AT4G17670.1 | Thale cress | nucleus | 64.41 | 71.7 |
| CDY72627 | Canola | cytosol, nucleus | 68.36 | 71.18 |
| VIT_02s0012g00280.t01 | Wine grape | nucleus | 54.8 | 61.78 |
| KRH77270 | Soybean | nucleus | 51.41 | 58.33 |
| Solyc06g061010.2.1 | Tomato | plastid | 43.5 | 56.62 |
| KRH28217 | Soybean | nucleus | 50.28 | 55.97 |
| KRH57558 | Soybean | plastid | 53.67 | 55.56 |
| KRH04277 | Soybean | nucleus, plastid | 53.11 | 52.81 |
| PGSC0003DMT400068381 | Potato | nucleus | 42.94 | 51.7 |
| Solyc08g077480.2.1 | Tomato | nucleus | 51.98 | 48.68 |
| AT2G44670.1 | Thale cress | cytosol, nucleus, plastid | 24.29 | 46.24 |
| GSMUA_Achr8P14880_001 | Banana | nucleus | 35.59 | 43.75 |
| GSMUA_Achr11P... | Banana | cytosol | 35.03 | 43.36 |
Protein Annotations
| MapMan:27.3.3 | EntrezGene:834752 | UniProt:A0A178U8H3 | ProteinID:AED95462.1 | ProteinID:ANM68253.1 | ArrayExpress:AT5G47060 |
| EnsemblPlantsGene:AT5G47060 | RefSeq:AT5G47060 | TAIR:AT5G47060 | RefSeq:AT5G47060-TAIR-G | EnsemblPlants:AT5G47060.2 | ProteinID:BAB10580.1 |
| ncoils:Coil | GO:GO:0008150 | InterPro:IPR007650 | RefSeq:NP_001330022.1 | RefSeq:NP_199517.1 | ProteinID:OAO89885.1 |
| PFAM:PF04570 | PFscan:PS51795 | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF73 | UniProt:Q9FGQ9 | UniParc:UPI000009F5AD |
| InterPro:Zf-FLZ_dom | SEG:seg | : | : | : | : |
Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9FGQ9]
Coordinates
chr5:+:19116785..19118744
Molecular Weight (calculated)
20383.3 Da
IEP (calculated)
7.029
GRAVY (calculated)
-1.081
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MELSSRKPYF IEEEEEENLA SSLSEMEAGF SGNNNNSNNH GNPQNGVVSS SRFSYGRLNS LRNSQSYYYN QYSVSSPRSV VSGRFHDFRF DIQQPHFLDS
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.