Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH77270 | Soybean | nucleus | 61.15 | 61.54 |
| VIT_15s0021g00940.t01 | Wine grape | nucleus | 38.22 | 59.41 |
| KRH28217 | Soybean | nucleus | 59.87 | 59.12 |
| AT4G17670.1 | Thale cress | nucleus | 57.32 | 56.6 |
| PGSC0003DMT400068383 | Potato | plastid | 47.13 | 55.64 |
| KRH57558 | Soybean | plastid | 60.51 | 55.56 |
| KRH04277 | Soybean | nucleus, plastid | 62.42 | 55.06 |
| AT5G47060.2 | Thale cress | nucleus | 61.78 | 54.8 |
| CDY40586 | Canola | nucleus | 54.78 | 54.43 |
| Bra024966.1-P | Field mustard | nucleus | 60.51 | 53.67 |
| CDX77736 | Canola | nucleus | 62.42 | 53.26 |
| Solyc06g061010.2.1 | Tomato | plastid | 45.86 | 52.94 |
| CDY33512 | Canola | nucleus | 60.51 | 51.91 |
| CDY72627 | Canola | cytosol, nucleus | 55.41 | 51.18 |
| CDY38416 | Canola | nucleus | 40.76 | 50.79 |
| CDY12406 | Canola | nucleus | 57.96 | 50.0 |
| Bra022099.1-P | Field mustard | nucleus | 57.32 | 49.45 |
| CDY09610 | Canola | nucleus | 52.87 | 49.4 |
| Bra017509.1-P | Field mustard | nucleus | 55.41 | 49.15 |
| CDY43446 | Canola | nucleus | 54.78 | 49.14 |
| CDX90460 | Canola | nucleus | 52.87 | 49.11 |
| Bra012651.1-P | Field mustard | nucleus | 52.23 | 48.52 |
| PGSC0003DMT400004695 | Potato | nucleus | 56.05 | 48.35 |
| Bra040173.1-P | Field mustard | nucleus | 46.5 | 48.03 |
| CDX78788 | Canola | nucleus | 46.5 | 48.03 |
| Solyc08g077480.2.1 | Tomato | nucleus | 54.14 | 44.97 |
| GSMUA_Achr11P... | Banana | cytosol | 37.58 | 41.26 |
| GSMUA_Achr8P14880_001 | Banana | nucleus | 35.67 | 38.89 |
Protein Annotations
| EntrezGene:100257499 | wikigene:100257499 | MapMan:27.3.3 | EMBL:AM484337 | ProteinID:CAN64280 | ProteinID:CAN64280.1 |
| ProteinID:CCB57952 | ProteinID:CCB57952.1 | UniProt:F6HTE2 | EMBL:FN596247 | InterPro:IPR007650 | EntrezGene:LOC100257499 |
| wikigene:LOC100257499 | PFAM:PF04570 | PFscan:PS51795 | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF73 | TIGR:TC54209 |
| UniParc:UPI00015C82F8 | ArrayExpress:VIT_02s0012g00280 | EnsemblPlantsGene:VIT_02s0012g00280 | EnsemblPlants:VIT_02s0012g00280.t01 | unigene:Vvi.6725 | RefSeq:XP_002282724 |
| RefSeq:XP_002282724.1 | InterPro:Zf-FLZ_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2:-:5999584..6000873
Molecular Weight (calculated)
18002.6 Da
IEP (calculated)
6.351
GRAVY (calculated)
-0.929
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSTPTRQPY FIEEEDDTQA SLSDMEAGFS GNHLFFSRSH SAPHRRGSLR NLSFFSASSP RSARFYDARF EDHQPHFLEA CFLCNKPLGD NRDIYMYRGD
101: TPFCSEECRQ EQIEMDEATE KNRSISSIKA FRKEQKTSST PSKSQNYPFR TGTVAAA
101: TPFCSEECRQ EQIEMDEATE KNRSISSIKA FRKEQKTSST PSKSQNYPFR TGTVAAA
001: MEVSMRKPYF IEEEDDGFVS LSEMEAGVSS PSCYNYPQSY YYNHHHHQYS VSSPRSGKFH DFRFDNSYYG YGQPHFLDSC FLCKKRLGDN RDIFMYRGDT
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA
Arabidopsis Description
Senescence-associated family protein (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8VZM9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.