Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90460 | Canola | nucleus | 85.53 | 80.47 |
| Bra012651.1-P | Field mustard | nucleus | 84.28 | 79.29 |
| CDY09610 | Canola | nucleus | 83.65 | 79.17 |
| CDY38416 | Canola | nucleus | 62.26 | 78.57 |
| Bra040173.1-P | Field mustard | nucleus | 71.7 | 75.0 |
| CDX78788 | Canola | nucleus | 71.7 | 75.0 |
| AT5G47060.2 | Thale cress | nucleus | 71.7 | 64.41 |
| VIT_02s0012g00280.t01 | Wine grape | nucleus | 56.6 | 57.32 |
| Solyc06g061010.2.1 | Tomato | plastid | 46.54 | 54.41 |
| KRH77270 | Soybean | nucleus | 52.2 | 53.21 |
| KRH28217 | Soybean | nucleus | 52.83 | 52.83 |
| AT2G44670.1 | Thale cress | cytosol, nucleus, plastid | 29.56 | 50.54 |
| KRH57558 | Soybean | plastid | 53.46 | 49.71 |
| PGSC0003DMT400068381 | Potato | nucleus | 45.28 | 48.98 |
| KRH04277 | Soybean | nucleus, plastid | 52.83 | 47.19 |
| Solyc08g077480.2.1 | Tomato | nucleus | 50.94 | 42.86 |
| GSMUA_Achr11P... | Banana | cytosol | 37.74 | 41.96 |
| GSMUA_Achr8P14880_001 | Banana | nucleus | 35.85 | 39.58 |
Protein Annotations
| MapMan:27.3.3 | EntrezGene:827487 | ProteinID:AEE83931.1 | ArrayExpress:AT4G17670 | EnsemblPlantsGene:AT4G17670 | RefSeq:AT4G17670 |
| TAIR:AT4G17670 | RefSeq:AT4G17670-TAIR-G | EnsemblPlants:AT4G17670.1 | TAIR:AT4G17670.1 | EMBL:AY064001 | EMBL:AY117186 |
| ncoils:Coil | GO:GO:0008150 | InterPro:IPR007650 | RefSeq:NP_567534.1 | PFAM:PF04570 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51795 |
| PANTHER:PTHR33059 | PANTHER:PTHR33059:SF73 | UniProt:Q8VZM9 | UniParc:UPI00000A7F97 | InterPro:Zf-FLZ_dom | SEG:seg |
Description
Senescence-associated family protein (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8VZM9]
Coordinates
chr4:-:9833491..9834859
Molecular Weight (calculated)
18594.4 Da
IEP (calculated)
7.496
GRAVY (calculated)
-1.056
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVSMRKPYF IEEEDDGFVS LSEMEAGVSS PSCYNYPQSY YYNHHHHQYS VSSPRSGKFH DFRFDNSYYG YGQPHFLDSC FLCKKRLGDN RDIFMYRGDT
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.