Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78788 | Canola | nucleus | 92.86 | 76.97 |
| CDX90460 | Canola | nucleus | 86.51 | 64.5 |
| CDY09610 | Canola | nucleus | 84.92 | 63.69 |
| AT4G17670.1 | Thale cress | nucleus | 78.57 | 62.26 |
| CDY40586 | Canola | nucleus | 69.84 | 55.7 |
| CDY33512 | Canola | nucleus | 74.6 | 51.37 |
| CDY72627 | Canola | cytosol, nucleus | 69.05 | 51.18 |
| CDX77736 | Canola | nucleus | 74.6 | 51.09 |
| CDX95609 | Canola | cytosol, mitochondrion, nucleus | 36.51 | 48.94 |
| CDX83422 | Canola | nucleus | 36.51 | 48.94 |
| CDY23451 | Canola | nucleus | 36.51 | 48.94 |
| CDY12406 | Canola | nucleus | 69.84 | 48.35 |
| CDY48248 | Canola | nucleus | 34.92 | 48.35 |
| CDY30481 | Canola | nucleus | 35.71 | 47.87 |
| CDX74676 | Canola | cytosol | 34.13 | 47.25 |
| CDY43446 | Canola | nucleus | 65.08 | 46.86 |
| KRH77270 | Soybean | nucleus | 56.35 | 45.51 |
| CDX71827 | Canola | cytosol, nucleus, plastid | 31.75 | 45.45 |
| CDY41184 | Canola | cytosol | 31.75 | 45.45 |
| Solyc06g061010.2.1 | Tomato | plastid | 47.62 | 44.12 |
| KRH28217 | Soybean | nucleus | 54.76 | 43.4 |
| KRH57558 | Soybean | plastid | 57.94 | 42.69 |
| VIT_02s0012g00280.t01 | Wine grape | nucleus | 50.79 | 40.76 |
| KRH04277 | Soybean | nucleus, plastid | 57.14 | 40.45 |
| PGSC0003DMT400068381 | Potato | nucleus | 46.03 | 39.46 |
| Solyc08g077480.2.1 | Tomato | nucleus | 56.35 | 37.57 |
| GSMUA_Achr11P... | Banana | cytosol | 38.89 | 34.27 |
| GSMUA_Achr8P14880_001 | Banana | nucleus | 37.3 | 32.64 |
Protein Annotations
| EnsemblPlants:CDY38416 | EnsemblPlantsGene:GSBRNA2T00065850001 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | ncoils:Coil | PANTHER:PTHR33059 |
| PANTHER:PTHR33059:SF73 | PFAM:PF04570 | PFscan:PS51795 | ProteinID:CDY38416 | ProteinID:CDY38416.1 | SEG:seg |
| UniParc:UPI0004EEB469 | UniProt:A0A078HL77 | MapMan:27.3.3 | : | : | : |
Description
BnaC01g10250DBnaC01g10250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HL77]
Coordinates
chrLK032423:-:259857..260955
Molecular Weight (calculated)
14688.1 Da
IEP (calculated)
9.619
GRAVY (calculated)
-1.135
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKYHPQSYY NYHQYSPRSV VPGKFHDLRF DHSSFGQQSL PHFLDSCSLC KKRLGDNRDI FMYRGDTPFC SEECREEQIN KDEVKEKKRN LSSSVKAMRR
101: NEKRSSSSSP TRSRDYALHT GTVAAA
101: NEKRSSSSSP TRSRDYALHT GTVAAA
001: MEVSMRKPYF IEEEDDGFVS LSEMEAGVSS PSCYNYPQSY YYNHHHHQYS VSSPRSGKFH DFRFDNSYYG YGQPHFLDSC FLCKKRLGDN RDIFMYRGDT
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA
Arabidopsis Description
Senescence-associated family protein (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8VZM9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.