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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra004855.1-P Field mustard cytosol 96.7 96.7
CDX74676 Canola cytosol 96.7 96.7
CDX95609 Canola cytosol, mitochondrion, nucleus 86.81 84.04
CDY30481 Canola nucleus 85.71 82.98
CDY23451 Canola nucleus 85.71 82.98
CDX83422 Canola nucleus 85.71 82.98
AT2G44670.1 Thale cress cytosol, nucleus, plastid 80.22 78.49
CDX71827 Canola cytosol, nucleus, plastid 58.24 60.23
CDY41184 Canola cytosol 58.24 60.23
VIT_15s0021g00940.t01 Wine grape nucleus 56.04 50.49
KRH48855 Soybean nucleus, plastid 58.24 46.09
KRH66418 Soybean plastid 58.24 46.09
PGSC0003DMT400004241 Potato cytosol 47.25 43.43
Solyc01g088660.2.1 Tomato cytosol, mitochondrion, nucleus 46.15 42.42
GSMUA_Achr5P12630_001 Banana cytosol 42.86 41.94
CDY38416 Canola nucleus 48.35 34.92
GSMUA_AchrUn_... Banana mitochondrion, nucleus 49.45 32.37
CDX78788 Canola nucleus 50.55 30.26
TraesCS2A01G454800.1 Wheat cytosol, nucleus, plastid 37.36 27.64
TraesCS2B01G476700.1 Wheat cytosol, nucleus, plastid 37.36 27.64
TraesCS2D01G455000.1 Wheat cytosol, nucleus, plastid 37.36 27.64
HORVU2Hr1G104960.1 Barley cytosol, nucleus, plastid 37.36 27.64
Os04t0586000-00 Rice nucleus 37.36 26.77
Zm00001d002523_P001 Maize nucleus 37.36 26.56
EES12738 Sorghum cytosol, nucleus, plastid 37.36 26.36
CDY40586 Canola nucleus 45.05 25.95
CDY09610 Canola nucleus 47.25 25.6
CDX90460 Canola nucleus 47.25 25.44
Zm00001d051492_P001 Maize cytosol 34.07 25.0
CDY72627 Canola cytosol, nucleus 45.05 24.12
EES05711 Sorghum cytosol 34.07 23.85
TraesCS6B01G289300.1 Wheat nucleus 32.97 23.81
TraesCS6A01G262000.1 Wheat nucleus 31.87 23.02
TraesCS6D01G242700.1 Wheat nucleus 31.87 23.02
CDY12406 Canola nucleus 45.05 22.53
CDX77736 Canola nucleus 45.05 22.28
CDY33512 Canola nucleus 43.96 21.86
GSMUA_Achr2P10380_001 Banana cytosol 56.04 20.48
CDY43446 Canola nucleus 38.46 20.0
HORVU6Hr1G066610.2 Barley cytosol, nucleus 31.87 19.73
Protein Annotations
EnsemblPlants:CDY48248EnsemblPlantsGene:GSBRNA2T00089114001InterPro:IPR007650InterPro:Zf-FLZ_domPANTHER:PTHR33059PANTHER:PTHR33059:SF73
PFAM:PF04570PFscan:PS51795ProteinID:CDY48248ProteinID:CDY48248.1UniParc:UPI0004EF0AF2UniProt:A0A078IGG2
MapMan:27.3.3:::::
Description
BnaC04g05070DBnaC04g05070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGG2]
Coordinates
chrLK032762:+:53306..54051
Molecular Weight (calculated)
10259.1 Da
IEP (calculated)
8.118
GRAVY (calculated)
-0.710
Length
91 amino acids
Sequence
(BLAST)
1: MASCYAEVFG SEEPHFLESC SLCRKHLGRN SDIFMYRGDK AFCSNECREE QIESDEAKEK SRKVSARSLR KKSSEAAKDC KTVRTGTLVV A
Best Arabidopsis Sequence Match ( AT2G44670.1 )
(BLAST)
1: MASYYSGFLG CEEPHFLESC SLCRKHLGLN SDIFMYRGDK AFCSNECREE QIESDEAKER KWKKSSRSLR KNSSETKESA AGNTVRTGTL VVA
Arabidopsis Description
At2g44670/F16B22.16 [Source:UniProtKB/TrEMBL;Acc:O80506]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.