Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G44670.1 | CDX85250 | AT3G29160.1 | 21798944 |
AT2G44670.1 | CDX86386 | AT3G29160.1 | 21798944 |
AT2G44670.1 | CDY04058 | AT3G29160.1 | 21798944 |
AT2G44670.1 | CDY44405 | AT3G29160.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra004855.1-P | Field mustard | cytosol | 96.7 | 96.7 |
CDX74676 | Canola | cytosol | 96.7 | 96.7 |
CDX95609 | Canola | cytosol, mitochondrion, nucleus | 86.81 | 84.04 |
CDY30481 | Canola | nucleus | 85.71 | 82.98 |
CDY23451 | Canola | nucleus | 85.71 | 82.98 |
CDX83422 | Canola | nucleus | 85.71 | 82.98 |
AT2G44670.1 | Thale cress | cytosol, nucleus, plastid | 80.22 | 78.49 |
CDX71827 | Canola | cytosol, nucleus, plastid | 58.24 | 60.23 |
CDY41184 | Canola | cytosol | 58.24 | 60.23 |
VIT_15s0021g00940.t01 | Wine grape | nucleus | 56.04 | 50.49 |
KRH48855 | Soybean | nucleus, plastid | 58.24 | 46.09 |
KRH66418 | Soybean | plastid | 58.24 | 46.09 |
PGSC0003DMT400004241 | Potato | cytosol | 47.25 | 43.43 |
Solyc01g088660.2.1 | Tomato | cytosol, mitochondrion, nucleus | 46.15 | 42.42 |
GSMUA_Achr5P12630_001 | Banana | cytosol | 42.86 | 41.94 |
CDY38416 | Canola | nucleus | 48.35 | 34.92 |
GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 49.45 | 32.37 |
CDX78788 | Canola | nucleus | 50.55 | 30.26 |
TraesCS2A01G454800.1 | Wheat | cytosol, nucleus, plastid | 37.36 | 27.64 |
TraesCS2B01G476700.1 | Wheat | cytosol, nucleus, plastid | 37.36 | 27.64 |
TraesCS2D01G455000.1 | Wheat | cytosol, nucleus, plastid | 37.36 | 27.64 |
HORVU2Hr1G104960.1 | Barley | cytosol, nucleus, plastid | 37.36 | 27.64 |
Os04t0586000-00 | Rice | nucleus | 37.36 | 26.77 |
Zm00001d002523_P001 | Maize | nucleus | 37.36 | 26.56 |
EES12738 | Sorghum | cytosol, nucleus, plastid | 37.36 | 26.36 |
CDY40586 | Canola | nucleus | 45.05 | 25.95 |
CDY09610 | Canola | nucleus | 47.25 | 25.6 |
CDX90460 | Canola | nucleus | 47.25 | 25.44 |
Zm00001d051492_P001 | Maize | cytosol | 34.07 | 25.0 |
CDY72627 | Canola | cytosol, nucleus | 45.05 | 24.12 |
EES05711 | Sorghum | cytosol | 34.07 | 23.85 |
TraesCS6B01G289300.1 | Wheat | nucleus | 32.97 | 23.81 |
TraesCS6A01G262000.1 | Wheat | nucleus | 31.87 | 23.02 |
TraesCS6D01G242700.1 | Wheat | nucleus | 31.87 | 23.02 |
CDY12406 | Canola | nucleus | 45.05 | 22.53 |
CDX77736 | Canola | nucleus | 45.05 | 22.28 |
CDY33512 | Canola | nucleus | 43.96 | 21.86 |
GSMUA_Achr2P10380_001 | Banana | cytosol | 56.04 | 20.48 |
CDY43446 | Canola | nucleus | 38.46 | 20.0 |
HORVU6Hr1G066610.2 | Barley | cytosol, nucleus | 31.87 | 19.73 |
Protein Annotations
EnsemblPlants:CDY48248 | EnsemblPlantsGene:GSBRNA2T00089114001 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF73 |
PFAM:PF04570 | PFscan:PS51795 | ProteinID:CDY48248 | ProteinID:CDY48248.1 | UniParc:UPI0004EF0AF2 | UniProt:A0A078IGG2 |
MapMan:27.3.3 | : | : | : | : | : |
Description
BnaC04g05070DBnaC04g05070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGG2]
Coordinates
chrLK032762:+:53306..54051
Molecular Weight (calculated)
10259.1 Da
IEP (calculated)
8.118
GRAVY (calculated)
-0.710
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MASCYAEVFG SEEPHFLESC SLCRKHLGRN SDIFMYRGDK AFCSNECREE QIESDEAKEK SRKVSARSLR KKSSEAAKDC KTVRTGTLVV A
1: MASYYSGFLG CEEPHFLESC SLCRKHLGLN SDIFMYRGDK AFCSNECREE QIESDEAKER KWKKSSRSLR KNSSETKESA AGNTVRTGTL VVA
Arabidopsis Description
At2g44670/F16B22.16 [Source:UniProtKB/TrEMBL;Acc:O80506]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.