Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063153 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44670.1 | PGSC0003DMT400063153 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g088660.2.1 | Tomato | cytosol, mitochondrion, nucleus | 95.96 | 95.96 |
| Bra007517.1-P | Field mustard | cytosol | 49.49 | 55.68 |
| CDY41184 | Canola | cytosol | 49.49 | 55.68 |
| AT2G44670.1 | Thale cress | cytosol, nucleus, plastid | 51.52 | 54.84 |
| VIT_15s0021g00940.t01 | Wine grape | nucleus | 55.56 | 54.46 |
| CDX71827 | Canola | cytosol, nucleus, plastid | 47.47 | 53.41 |
| CDX95609 | Canola | cytosol, mitochondrion, nucleus | 49.49 | 52.13 |
| Bra000358.1-P | Field mustard | nucleus | 48.48 | 51.06 |
| CDX83422 | Canola | nucleus | 48.48 | 51.06 |
| Bra004855.1-P | Field mustard | cytosol | 46.46 | 50.55 |
| CDX74676 | Canola | cytosol | 46.46 | 50.55 |
| Bra037639.1-P | Field mustard | nucleus | 45.45 | 47.87 |
| CDY23451 | Canola | nucleus | 45.45 | 47.87 |
| CDY30481 | Canola | nucleus | 45.45 | 47.87 |
| CDY48248 | Canola | nucleus | 43.43 | 47.25 |
| KRH48855 | Soybean | nucleus, plastid | 53.54 | 46.09 |
| KRH66418 | Soybean | plastid | 52.53 | 45.22 |
| GSMUA_Achr5P12630_001 | Banana | cytosol | 42.42 | 45.16 |
| PGSC0003DMT400068383 | Potato | plastid | 46.46 | 34.59 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 43.43 | 30.94 |
| PGSC0003DMT400068381 | Potato | nucleus | 44.44 | 29.93 |
| TraesCS2B01G476700.1 | Wheat | cytosol, nucleus, plastid | 36.36 | 29.27 |
| TraesCS2D01G455000.1 | Wheat | cytosol, nucleus, plastid | 36.36 | 29.27 |
| TraesCS2A01G454800.1 | Wheat | cytosol, nucleus, plastid | 36.36 | 29.27 |
| HORVU2Hr1G104960.1 | Barley | cytosol, nucleus, plastid | 36.36 | 29.27 |
| TraesCS6B01G289300.1 | Wheat | nucleus | 36.36 | 28.57 |
| Os04t0586000-00 | Rice | nucleus | 36.36 | 28.35 |
| TraesCS6A01G262000.1 | Wheat | nucleus | 35.35 | 27.78 |
| TraesCS6D01G242700.1 | Wheat | nucleus | 35.35 | 27.78 |
| Zm00001d051492_P001 | Maize | cytosol | 34.34 | 27.42 |
| EES05711 | Sorghum | cytosol | 35.35 | 26.92 |
| Zm00001d002523_P001 | Maize | nucleus | 34.34 | 26.56 |
| EES12738 | Sorghum | cytosol, nucleus, plastid | 34.34 | 26.36 |
| PGSC0003DMT400004695 | Potato | nucleus | 43.43 | 23.63 |
| HORVU6Hr1G066610.2 | Barley | cytosol, nucleus | 33.33 | 22.45 |
| GSMUA_Achr2P10380_001 | Banana | cytosol | 45.45 | 18.07 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400004241 | EnsemblPlantsGene:PGSC0003DMG400001688 | EntrezGene:102588165 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 |
| PANTHER:PTHR33059:SF73 | PFAM:PF04570 | PFscan:PS51795 | PGSC:PGSC0003DMG400001688 | RefSeq:XP_006354644.1 | SEG:seg |
| UniParc:UPI0002948BF8 | UniProt:M0ZN45 | MapMan:27.3.3 | : | : | : |
Description
Ethphon-induced protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001688]
Coordinates
chr1:+:68509358..68510493
Molecular Weight (calculated)
11339.2 Da
IEP (calculated)
6.752
GRAVY (calculated)
-0.882
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MNAALYYTGC EENYQPHFLD TCSLCQRTLA HNHDIFMYRG DTPFCSQECR QEQIEMDEAN ERKWKIAAAK RSSRTKTETP TTKETDANKA VRNGTVAVA
1: MASYYSGFLG CEEPHFLESC SLCRKHLGLN SDIFMYRGDK AFCSNECREE QIESDEAKER KWKKSSRSLR KNSSETKESA AGNTVRTGTL VVA
Arabidopsis Description
At2g44670/F16B22.16 [Source:UniProtKB/TrEMBL;Acc:O80506]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.