Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G242700.1 | Wheat | nucleus | 97.62 | 97.62 |
| TraesCS6B01G289300.1 | Wheat | nucleus | 95.24 | 95.24 |
| HORVU6Hr1G066610.2 | Barley | cytosol, nucleus | 87.3 | 74.83 |
| EES05711 | Sorghum | cytosol | 62.7 | 60.77 |
| Zm00001d051492_P001 | Maize | cytosol | 56.35 | 57.26 |
| TraesCS2A01G454800.1 | Wheat | cytosol, nucleus, plastid | 45.24 | 46.34 |
| GSMUA_Achr5P12630_001 | Banana | cytosol | 28.57 | 38.71 |
| Solyc01g088660.2.1 | Tomato | cytosol, mitochondrion, nucleus | 27.78 | 35.35 |
| PGSC0003DMT400004241 | Potato | cytosol | 27.78 | 35.35 |
| TraesCS2A01G454400.1 | Wheat | cytosol, nucleus, plastid | 20.63 | 34.21 |
| CDY41184 | Canola | cytosol | 23.81 | 34.09 |
| Bra007517.1-P | Field mustard | cytosol | 23.81 | 34.09 |
| KRH48855 | Soybean | nucleus, plastid | 30.95 | 33.91 |
| KRH66418 | Soybean | plastid | 30.16 | 33.04 |
| CDX71827 | Canola | cytosol, nucleus, plastid | 23.02 | 32.95 |
| VIT_15s0021g00940.t01 | Wine grape | nucleus | 26.19 | 32.67 |
| CDX83422 | Canola | nucleus | 23.81 | 31.91 |
| Bra000358.1-P | Field mustard | nucleus | 23.81 | 31.91 |
| Bra004855.1-P | Field mustard | cytosol | 23.02 | 31.87 |
| CDX74676 | Canola | cytosol | 23.02 | 31.87 |
| CDY48248 | Canola | nucleus | 23.02 | 31.87 |
| TraesCS2A01G453500.1 | Wheat | cytosol | 23.81 | 31.25 |
| TraesCS2A01G454600.1 | Wheat | cytosol | 23.81 | 31.25 |
| CDX95609 | Canola | cytosol, mitochondrion, nucleus | 23.02 | 30.85 |
| TraesCS2A01G454700.1 | Wheat | cytosol | 23.02 | 30.21 |
| AT2G44670.1 | Thale cress | cytosol, nucleus, plastid | 22.22 | 30.11 |
| CDY30481 | Canola | nucleus | 22.22 | 29.79 |
| Bra037639.1-P | Field mustard | nucleus | 22.22 | 29.79 |
| CDY23451 | Canola | nucleus | 22.22 | 29.79 |
| TraesCS2A01G453900.1 | Wheat | cytosol | 23.02 | 29.59 |
| TraesCS2A01G453400.1 | Wheat | cytosol | 24.6 | 29.25 |
| TraesCS2A01G453800.1 | Wheat | cytosol | 22.22 | 29.17 |
| TraesCS2A01G453700.1 | Wheat | cytosol | 21.43 | 29.03 |
| TraesCS6A01G262100.1 | Wheat | extracellular, plastid | 24.6 | 28.97 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 30.95 | 28.06 |
| TraesCS2A01G454500.1 | Wheat | cytosol, extracellular | 22.22 | 27.72 |
| TraesCS7A01G385100.1 | Wheat | cytosol | 28.57 | 27.27 |
| TraesCS2A01G454300.1 | Wheat | cytosol | 20.63 | 27.08 |
| TraesCS6A01G261800.1 | Wheat | nucleus | 31.75 | 26.32 |
| TraesCS2A01G454200.1 | Wheat | cytosol | 19.84 | 26.04 |
| TraesCS2A01G454000.1 | Wheat | cytosol | 19.05 | 24.74 |
| TraesCS2A01G453600.1 | Wheat | plastid | 24.6 | 15.98 |
| GSMUA_Achr2P10380_001 | Banana | cytosol | 30.16 | 15.26 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G262000.1 | EnsemblPlantsGene:TraesCS6A01G262000 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR007650 | InterPro:IPR013088 | InterPro:Zf-FLZ_dom | InterPro:Znf_NHR/GATA | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF69 |
| PFAM:PF04570 | PFscan:PS51795 | SEG:seg | MapMan:27.3.3 | : | : |
Description
No Description!
Coordinates
chr6A:-:485157165..485157623
Molecular Weight (calculated)
14405.6 Da
IEP (calculated)
8.340
GRAVY (calculated)
-1.020
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDFYYFPSS LETSEIVHRG FLPVVHSSPR NRSSPSPRPR RGSRDDAGEL GHHYLDACFR CGRTIAGNKD IFMYRGDTPF CSEECRQQQI DTDEAAEKRS
101: KKSAAATTTE QQSQRQSPHR VPVWAR
101: KKSAAATTTE QQSQRQSPHR VPVWAR
001: MELSSRKPYF IEEEEEENLA SSLSEMEAGF SGNNNNSNNH GNPQNGVVSS SRFSYGRLNS LRNSQSYYYN QYSVSSPRSV VSGRFHDFRF DIQQPHFLDS
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9FGQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.