CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01228
KRH18445
KRH44934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44670.1	KRH01228	AT3G29160.1	21798944
AT2G44670.1	KRH18445	AT3G29160.1	21798944
AT2G44670.1	KRH44934	AT3G29160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66418	Soybean	plastid	96.52	96.52
VIT_15s0021g00940.t01	Wine grape	nucleus	62.61	71.29
Bra004855.1-P	Field mustard	cytosol	48.7	61.54
CDX74676	Canola	cytosol	48.7	61.54
CDX95609	Canola	cytosol, mitochondrion, nucleus	47.83	58.51
CDY48248	Canola	nucleus	46.09	58.24
AT2G44670.1	Thale cress	cytosol, nucleus, plastid	46.96	58.06
CDX83422	Canola	nucleus	46.96	57.45
Bra000358.1-P	Field mustard	nucleus	46.96	57.45
CDY23451	Canola	nucleus	46.96	57.45
CDY30481	Canola	nucleus	46.09	56.38
Bra037639.1-P	Field mustard	nucleus	46.09	56.38
CDY41184	Canola	cytosol	41.74	54.55
Bra007517.1-P	Field mustard	cytosol	41.74	54.55
PGSC0003DMT400004241	Potato	cytosol	46.09	53.54
CDX71827	Canola	cytosol, nucleus, plastid	40.87	53.41
Solyc01g088660.2.1	Tomato	cytosol, mitochondrion, nucleus	45.22	52.53
GSMUA_Achr5P12630_001	Banana	cytosol	40.87	50.54
KRH77270	Soybean	nucleus	60.0	44.23
KRH28217	Soybean	nucleus	56.52	40.88
KRH57558	Soybean	plastid	60.0	40.35
KRH04277	Soybean	nucleus, plastid	59.13	38.2
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	46.09	38.13
Os04t0586000-00	Rice	nucleus	40.87	37.01
Zm00001d002523_P001	Maize	nucleus	40.87	36.72
HORVU2Hr1G104960.1	Barley	cytosol, nucleus, plastid	39.13	36.59
EES12738	Sorghum	cytosol, nucleus, plastid	40.87	36.43
TraesCS2A01G454800.1	Wheat	cytosol, nucleus, plastid	38.26	35.77
TraesCS2B01G476700.1	Wheat	cytosol, nucleus, plastid	38.26	35.77
TraesCS2D01G455000.1	Wheat	cytosol, nucleus, plastid	38.26	35.77
TraesCS6A01G262000.1	Wheat	nucleus	33.91	30.95
TraesCS6B01G289300.1	Wheat	nucleus	33.91	30.95
TraesCS6D01G242700.1	Wheat	nucleus	33.04	30.16
EES05711	Sorghum	cytosol	33.91	30.0
Zm00001d051492_P001	Maize	cytosol	30.43	28.23
HORVU6Hr1G066610.2	Barley	cytosol, nucleus	32.17	25.17
GSMUA_Achr2P10380_001	Banana	cytosol	49.57	22.89

Protein Annotations

EMBL:ACUP02004299	EMBL:BT090400	EnsemblPlants:KRH48855	EnsemblPlantsGene:GLYMA_07G117300	EntrezGene:100499981	InterPro:IPR007650
InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF73	PFAM:PF04570	PFscan:PS51795	ProteinID:KRH48855
ProteinID:KRH48855.1	SEG:seg	UniParc:UPI0001B14E34	UniProt:C6SZ02	MapMan:27.3.3	:

Description

hypothetical protein

Coordinates

chr7:+:13123420..13125122

Molecular Weight (calculated)

13026.2 Da

IEP (calculated)

8.950

GRAVY (calculated)

-0.876

Length

115 amino acids

Sequence
(BLAST)

001: MATFPSPPSP SSSSSIPSPR SRMFYYAGSE DHYEEPHFLQ ACFLCRKPLG QNRDIFMYRG NTPFCSKECR QEQIEIDEAK EKSWKLSSKR GVRQSETNQN
101: STPNKAVRTG TVAVA

Best Arabidopsis Sequence Match ( AT4G17670.1 )
(BLAST)

001: MEVSMRKPYF IEEEDDGFVS LSEMEAGVSS PSCYNYPQSY YYNHHHHQYS VSSPRSGKFH DFRFDNSYYG YGQPHFLDSC FLCKKRLGDN RDIFMYRGDT
101: PFCSEECREE QIERDEAKEK KQSLSTSVKA MRRNEKRSSS SSPTRSRNYA FRTGTVAAA

Arabidopsis Description

Senescence-associated family protein (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8VZM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.