Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G081310.4 | |
| HORVU3Hr1G069190.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44670.1 | HORVU1Hr1G081310.4 | AT3G29160.1 | 21798944 |
| AT2G44670.1 | HORVU3Hr1G069190.1 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G262000.1 | Wheat | nucleus | 74.83 | 87.3 |
| TraesCS6D01G242700.1 | Wheat | nucleus | 72.79 | 84.92 |
| TraesCS6B01G289300.1 | Wheat | nucleus | 72.79 | 84.92 |
| EES05711 | Sorghum | cytosol | 51.02 | 57.69 |
| Zm00001d051492_P001 | Maize | cytosol | 46.26 | 54.84 |
| HORVU2Hr1G104960.1 | Barley | cytosol, nucleus, plastid | 34.01 | 40.65 |
| GSMUA_Achr5P12630_001 | Banana | cytosol | 24.49 | 38.71 |
| Bra007517.1-P | Field mustard | cytosol | 21.09 | 35.23 |
| CDY41184 | Canola | cytosol | 21.09 | 35.23 |
| CDX71827 | Canola | cytosol, nucleus, plastid | 20.41 | 34.09 |
| Solyc01g088660.2.1 | Tomato | cytosol, mitochondrion, nucleus | 22.45 | 33.33 |
| PGSC0003DMT400004241 | Potato | cytosol | 22.45 | 33.33 |
| KRH48855 | Soybean | nucleus, plastid | 25.17 | 32.17 |
| CDX83422 | Canola | nucleus | 20.41 | 31.91 |
| Bra000358.1-P | Field mustard | nucleus | 20.41 | 31.91 |
| CDX74676 | Canola | cytosol | 19.73 | 31.87 |
| Bra004855.1-P | Field mustard | cytosol | 19.73 | 31.87 |
| CDY48248 | Canola | nucleus | 19.73 | 31.87 |
| VIT_15s0021g00940.t01 | Wine grape | nucleus | 21.77 | 31.68 |
| KRH66418 | Soybean | plastid | 24.49 | 31.3 |
| HORVU2Hr1G104980.1 | Barley | cytosol | 20.41 | 31.25 |
| CDX95609 | Canola | cytosol, mitochondrion, nucleus | 19.73 | 30.85 |
| HORVU2Hr1G105060.1 | Barley | cytosol | 19.73 | 30.21 |
| HORVU2Hr1G105010.1 | Barley | cytosol | 19.73 | 30.21 |
| AT2G44670.1 | Thale cress | cytosol, nucleus, plastid | 19.05 | 30.11 |
| HORVU2Hr1G105050.1 | Barley | cytosol | 20.41 | 30.0 |
| HORVU6Hr1G066670.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 21.77 | 29.91 |
| HORVU6Hr1G066540.2 | Barley | nucleus | 29.25 | 28.29 |
| Bra037639.1-P | Field mustard | nucleus | 17.69 | 27.66 |
| CDY23451 | Canola | nucleus | 17.69 | 27.66 |
| CDY30481 | Canola | nucleus | 17.69 | 27.66 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 25.85 | 27.34 |
| HORVU2Hr1G104950.3 | Barley | nucleus | 26.53 | 27.27 |
| HORVU2Hr1G105100.2 | Barley | cytosol | 14.97 | 20.56 |
| HORVU2Hr1G105140.2 | Barley | mitochondrion, plastid | 22.45 | 20.25 |
| GSMUA_Achr2P10380_001 | Banana | cytosol | 25.17 | 14.86 |
| HORVU0Hr1G021850.2 | Barley | plastid | 22.45 | 14.8 |
| HORVU2Hr1G105090.1 | Barley | cytosol, plastid | 20.41 | 12.82 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G066610.2 | EnsemblPlantsGene:HORVU6Hr1G066610 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF69 |
| PFAM:PF04570 | PFscan:PS51795 | SEG:seg | UniParc:UPI000B4727B2 | UniProt:A0A287UHK3 | MapMan:27.3.3 |
Description
No Description!
Coordinates
chrchr6H:-:460952837..460953833
Molecular Weight (calculated)
16635.1 Da
IEP (calculated)
8.005
GRAVY (calculated)
-1.169
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: SSSQPTEQQP TGSKGELNGD QPSQEMEDFY YFPTSLETSE KIHRAFLPVV HSSPHNRSSP SPRPRRDAGE LGHHYLNACF RCGRTLSGNK DIFMYRGDTP
101: FCSEECRQQQ IDTDDAAEKR SKKSAAATAT EQQSRRHSPH RVPVWAR
101: FCSEECRQQQ IDTDDAAEKR SKKSAAATAT EQQSRRHSPH RVPVWAR
001: MELSSRKPYF IEEEEEENLA SSLSEMEAGF SGNNNNSNNH GNPQNGVVSS SRFSYGRLNS LRNSQSYYYN QYSVSSPRSV VSGRFHDFRF DIQQPHFLDS
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9FGQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.