Factsheet for Solyc01g088660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067030.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44670.1	Solyc02g067030.2.1	AT3G29160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004241	Potato	cytosol	95.96	95.96
VIT_15s0021g00940.t01	Wine grape	nucleus	55.56	54.46
Bra007517.1-P	Field mustard	cytosol	47.47	53.41
CDY41184	Canola	cytosol	47.47	53.41
AT2G44670.1	Thale cress	cytosol, nucleus, plastid	49.49	52.69
CDX71827	Canola	cytosol, nucleus, plastid	45.45	51.14
CDX95609	Canola	cytosol, mitochondrion, nucleus	47.47	50.0
Bra004855.1-P	Field mustard	cytosol	45.45	49.45
CDX74676	Canola	cytosol	45.45	49.45
Bra000358.1-P	Field mustard	nucleus	46.46	48.94
CDX83422	Canola	nucleus	46.46	48.94
CDY48248	Canola	nucleus	42.42	46.15
CDY30481	Canola	nucleus	43.43	45.74
CDY23451	Canola	nucleus	43.43	45.74
Bra037639.1-P	Field mustard	nucleus	43.43	45.74
KRH48855	Soybean	nucleus, plastid	52.53	45.22
KRH66418	Soybean	plastid	51.52	44.35
GSMUA_Achr5P12630_001	Banana	cytosol	41.41	44.09
Solyc06g061010.2.1	Tomato	plastid	43.43	31.62
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	43.43	30.94
HORVU2Hr1G104960.1	Barley	cytosol, nucleus, plastid	37.37	30.08
TraesCS2A01G454800.1	Wheat	cytosol, nucleus, plastid	37.37	30.08
TraesCS2B01G476700.1	Wheat	cytosol, nucleus, plastid	37.37	30.08
TraesCS2D01G455000.1	Wheat	cytosol, nucleus, plastid	37.37	30.08
TraesCS6B01G289300.1	Wheat	nucleus	37.37	29.37
TraesCS6D01G242700.1	Wheat	nucleus	36.36	28.57
Os04t0586000-00	Rice	nucleus	36.36	28.35
TraesCS6A01G262000.1	Wheat	nucleus	35.35	27.78
Zm00001d051492_P001	Maize	cytosol	34.34	27.42
EES05711	Sorghum	cytosol	35.35	26.92
Zm00001d002523_P001	Maize	nucleus	34.34	26.56
EES12738	Sorghum	cytosol, nucleus, plastid	34.34	26.36
Solyc08g077480.2.1	Tomato	nucleus	44.44	23.28
HORVU6Hr1G066610.2	Barley	cytosol, nucleus	33.33	22.45
GSMUA_Achr2P10380_001	Banana	cytosol	45.45	18.07

Protein Annotations

MapMan:27.3.3	Gene3D:3.30.50.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	InterPro:IPR007650
InterPro:IPR013088	UniProt:K4AYQ6	PFAM:PF04570	PFscan:PS51795	PANTHER:PTHR33059	PANTHER:PTHR33059:SF73
EnsemblPlantsGene:Solyc01g088660.2	EnsemblPlants:Solyc01g088660.2.1	UniParc:UPI000276196C	InterPro:Zf-FLZ_dom	InterPro:Znf_NHR/GATA	SEG:seg

Description

No Description!

Coordinates

chr1:+:83424796..83425964

Molecular Weight (calculated)

11342.2 Da

IEP (calculated)

6.236

GRAVY (calculated)

-0.763

Length

99 amino acids

Sequence
(BLAST)

1: MNAALYYTGC EENYQPHFLD TCSLCQRTLA HNHDIFMYRG DTPFCSQECR QEQIEMDEAI ERKWKIAAAK RSSRTKTETQ TTKETDSNKA VLNGTVAVA

Best Arabidopsis Sequence Match ( AT5G47060.1 )
(BLAST)

001: MELSSRKPYF IEEEEEENLA SSLSEMEAGF SGNNNNSNNH GNPQNGVVSS SRFSYGRLNS LRNSQSYYYN QYSVSSPRSV VSGRFHDFRF DIQQPHFLDS
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA

Arabidopsis Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9FGQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.