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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g067590.2.1
Solyc01g067600.2.1
Solyc01g099280.2.1
Solyc02g092930.1.1
Solyc03g111160.2.1
Solyc03g111310.2.1
Solyc03g112920.1.1
Solyc03g118540.2.1
Solyc03g122030.1.1
Solyc04g007180.1.1
Solyc04g072780.2.1
Solyc05g009450.1.1
Solyc06g068930.1.1
Solyc08g067140.1.1
Solyc08g067490.1.1
Solyc08g067570.1.1
Solyc08g067590.1.1
Solyc09g010620.1.1
Solyc09g082950.1.1
Solyc11g007830.1.1
Solyc11g069300.1.1
Solyc11g069310.1.1
Solyc12g017610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G29160.1 Solyc09g082950.1.1 AT1G07310.1 21798944
AT3G29160.1 Solyc01g067590.2.1 AT1G09020.1 17028154
AT3G29160.1 Solyc01g099280.2.1 AT1G09020.1 17028154
AT3G29160.1 Solyc01g067590.2.1 AT1G09020.1 21558384
AT3G29160.1 Solyc01g099280.2.1 AT1G09020.1 21558384
AT3G29160.1 Solyc04g007180.1.1 AT1G25470.1 21798944
AT3G29160.1 Solyc05g009450.1.1 AT1G25470.1 21798944
AT3G29160.1 Solyc04g072780.2.1 AT1G78020.1 21798944
AT3G29160.1 Solyc02g092930.1.1 AT2G23290.1 21798944
AT3G29160.1 Solyc03g122030.1.1 AT3G14180.1 21798944
AT3G29160.1 Solyc03g118540.2.1 AT3G17860.1 21798944
AT3G29160.1 Solyc06g068930.1.1 AT3G17860.1 21798944
AT3G29160.1 Solyc11g069300.1.1 AT3G45240.1 19339507
AT3G29160.1 Solyc11g069310.1.1 AT3G45240.1 19339507
AT3G29160.1 Solyc03g111310.2.1 AT3G48530.1 10417704
AT3G29160.1 Solyc03g112920.1.1 AT3G48550.1 21798944
AT3G29160.1 Solyc03g111160.2.1 AT3G52180.1 12148529
AT3G29160.1 Solyc11g007830.1.1 AT3G52180.1 12148529
AT3G29160.1 Solyc01g067600.2.1 AT4G15730.1 21798944
AT3G29160.1 Solyc08g067140.1.1 AT4G15730.1 21798944
AT3G29160.1 Solyc08g067490.1.1 AT4G15730.1 21798944
AT3G29160.1 Solyc08g067570.1.1 AT4G15730.1 21798944
AT3G29160.1 Solyc08g067590.1.1 AT4G15730.1 21798944
AT3G29160.1 Solyc12g017610.1.1 AT4G15730.1 21798944
AT3G29160.1 Solyc09g010620.1.1 AT4G15900.1 10220464
AT3G29160.1 Solyc11g069300.1.1 AT5G60550.1 19339507
AT3G29160.1 Solyc11g069310.1.1 AT5G60550.1 19339507
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_14s0108g01230.t01 Wine grape cytosol 87.16 87.16
KRH01228 Soybean cytosol, nucleus 87.16 87.16
KRH44934 Soybean cytosol, endoplasmic reticulum, nucleus 85.8 86.47
CDY37545 Canola cytosol 83.85 85.18
KRH18445 Soybean cytosol, endoplasmic reticulum 85.21 85.05
Bra039146.1-P Field mustard cytosol 83.66 84.98
CDY43267 Canola cytosol 83.66 84.98
CDY55800 Canola cytosol 83.85 84.34
CDY34697 Canola cytosol 83.85 84.34
AT3G01090.2 Thale cress cytosol 84.44 81.12
CDX74283 Canola cytosol 77.43 79.44
CDY44405 Canola cytosol 79.18 79.34
AT3G29160.1 Thale cress cytosol 78.99 79.3
CDX85250 Canola cytosol 78.79 79.1
Bra025379.1-P Field mustard cytosol 78.79 79.1
CDX86386 Canola cytosol 78.79 78.95
CDY04058 Canola cytosol 78.02 78.94
Bra033088.1-P Field mustard cytosol 75.1 78.62
GSMUA_AchrUn_... Banana cytosol, plasma membrane 69.84 78.38
Solyc03g115700.2.1 Tomato cytosol, nucleus 68.09 69.44
GSMUA_Achr10P... Banana cytosol 79.18 65.65
Bra021482.1-P Field mustard cytosol 75.1 60.5
Solyc11g062410.1.1 Tomato plastid 30.35 35.7
Solyc05g047600.2.1 Tomato cytosol 31.13 35.48
Solyc01g008850.2.1 Tomato plastid 29.77 34.93
Solyc02g021440.2.1 Tomato cytosol 30.93 34.79
Solyc12g098910.1.1 Tomato cytosol 30.54 33.62
Solyc05g053210.2.1 Tomato cytosol 29.77 33.26
Solyc04g076810.2.1 Tomato cytosol 28.4 32.66
Solyc12g009570.1.1 Tomato cytosol 28.02 32.29
CDX91963 Canola plasma membrane 76.85 31.85
Protein Annotations
KEGG:04150+2.7.11.1KEGG:04151+2.7.11.1KEGG:04714+2.7.11.1KEGG:04926+2.7.11.1KEGG:05165+2.7.11.1Gene3D:1.10.510.10
MapMan:18.4.5.1.1MapMan:27.3.1.1EMBL:AF143743GO:GO:0000003GO:GO:0000166GO:GO:0003006
GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004674GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006464
GO:GO:0006468GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0008150GO:GO:0008152
GO:GO:0009594GO:GO:0009605GO:GO:0009719GO:GO:0009738GO:GO:0009791GO:GO:0009987
GO:GO:0009991GO:GO:0010050GO:GO:0010150GO:GO:0010182GO:GO:0016301GO:GO:0016310
GO:GO:0016740GO:GO:0019538GO:GO:0035556GO:GO:0080022InterPro:IPR000719InterPro:IPR001772
InterPro:IPR015940InterPro:KA1/Ssp2_CInterPro:KA1_domInterPro:Kinase-like_dom_sfPFAM:PF00069PFAM:PF00627
PFAM:PF02149PIRSF:PIRSF000615ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PFscan:PS50030
PFscan:PS50032PANTHER:PTHR24343PANTHER:PTHR24343:SF156InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSUniProt:Q9M726
SMART:SM00165SMART:SM00220SUPFAM:SSF103243SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASEnsemblPlantsGene:Solyc02g067030.2
EnsemblPlants:Solyc02g067030.2.1InterPro:UBAUniParc:UPI000009FD71SEG:seg::
Description
Non-specific serine/threonine protein kinase [Source:UniProtKB/TrEMBL;Acc:Q9M726]
Coordinates
chr2:-:37261990..37273759
Molecular Weight (calculated)
58828.4 Da
IEP (calculated)
8.585
GRAVY (calculated)
-0.311
Length
514 amino acids
Sequence
(BLAST)
001: MDGTAVQGTS SVDSFLRNYK LGKTLGIGSF GKVKIAEHTL TGHKVAVKIL NRRKIRNMDM EEKVRREIKI LRLFMHPHII RLYEVIETPS DIYVVMEYVK
101: SGELFDYIVE KGRLQEDEAR NFFQQIISGV EYCHRNMVVH RDLKPENLLL DSKWNVKIAD FGLSNIMRDG HFLKTSCGSP NYAAPEVISG KLYAGPEVDV
201: WSCGVILYAL LCGTLPFDDE NIPNLFKKIK GGIYTLPSHL SAGARDLIPR MLIVDPMKRM TIPEIRLHPW FQAHLPRYLA VPPPDTTQQA KKIDEEILQE
301: VVKMGFDRNN LTESLRNRVQ NEGTVAYYLL LDNRHRVSTG YLGAEFQESM EYGYNRINSN ETAASPVGQR FPGIMDYQQA GARQFPIERK WALGLQSRAH
401: PREIMTEVLK ALQELNVCWK KIGQYNMKCR WVPSLPGHHE GMGVNSMHGN QFFGDDSSII ENDGATKLTN VVKFEVQLYK TREEKYLLDL QRLQGPQFLF
501: LDLCAAFLAQ LRVL
Best Arabidopsis Sequence Match ( AT3G01090.2 )
(BLAST)
001: MFKRVDEFNL VSSTIDHRIF KSRMDGSGTG SRSGVESILP NYKLGRTLGI GSFGRVKIAE HALTGHKVAI KILNRRKIKN MEMEEKVRRE IKILRLFMHP
101: HIIRLYEVIE TPTDIYLVME YVNSGELFDY IVEKGRLQED EARNFFQQII SGVEYCHRNM VVHRDLKPEN LLLDSKCNVK IADFGLSNIM RDGHFLKTSC
201: GSPNYAAPEV ISGKLYAGPE VDVWSCGVIL YALLCGTLPF DDENIPNLFK KIKGGIYTLP SHLSPGARDL IPRMLVVDPM KRVTIPEIRQ HPWFQAHLPR
301: YLAVPPPDTV QQAKKIDEEI LQEVINMGFD RNHLIESLRN RTQNDGTVTY YLILDNRFRA SSGYLGAEFQ ETMEGTPRMH PAESVASPVS HRLPGLMEYQ
401: GVGLRSQYPV ERKWALGLQS RAHPREIMTE VLKALQDLNV CWKKIGHYNM KCRWVPNSSA DGMLSNSMHD NNYFGDESSI IENEAAVKSP NVVKFEIQLY
501: KTRDDKYLLD LQRVQGPQFL FLDLCAAFLA QLRVL
Arabidopsis Description
KIN10SNF1-related protein kinase catalytic subunit alpha KIN10 [Source:UniProtKB/Swiss-Prot;Acc:Q38997]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.