Factsheet for Solyc02g092930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc01g107290.2.1
Solyc02g067920.2.1
Solyc02g091710.2.1
Solyc03g005240.1.1
Solyc06g008600.2.1
Solyc06g053930.2.1
Solyc06g054260.1.1
Solyc06g084040.2.1
Solyc09g007250.2.1
Solyc09g065990.2.1
Solyc10g077010.1.1
Solyc10g079430.1.1
Solyc10g080400.1.1
Solyc10g081170.1.1
Solyc10g083190.1.1
Solyc10g084350.1.1
Solyc10g086010.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23290.1	Solyc01g107290.2.1	AT1G49850.1	21798944
AT2G23290.1	Solyc06g008600.2.1	AT2G30580.1	21798944
AT2G23290.1	Solyc06g084040.2.1	AT2G30580.1	21798944
AT2G23290.1	Solyc09g065990.2.1	AT2G30580.1	21798944
AT2G23290.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT2G23290.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT2G23290.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT2G23290.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT2G23290.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT2G23290.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT2G23290.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT2G23290.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT2G23290.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT2G23290.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT2G23290.1	Solyc10g080400.1.1	AT2G42260.1	21798944
AT2G23290.1	Solyc02g067920.2.1	AT3G01690.1	21798944
AT2G23290.1	Solyc09g007250.2.1	AT3G09630.1	21798944
AT2G23290.1	Solyc10g084350.1.1	AT3G09630.1	21798944
AT2G23290.1	Solyc10g086010.1.1	AT3G09630.1	21798944
AT2G23290.1	Solyc10g083190.1.1	AT3G11590.1	21798944
AT2G23290.1	Solyc10g079430.1.1	AT3G60360.1	21798944
AT2G23290.1	Solyc06g054260.1.1	AT4G02770.1	21798944
AT2G23290.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT2G23290.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT2G23290.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT2G23290.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT2G23290.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT2G23290.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT2G23290.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT2G23290.1	Solyc02g091710.2.1	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064306	Potato	mitochondrion, nucleus	96.12	93.53
VIT_07s0129g01050.t01	Wine grape	nucleus	53.19	61.54
KRH28419	Soybean	nucleus	50.42	61.28
KRH77058	Soybean	nucleus	51.52	60.98
VIT_18s0001g09850.t01	Wine grape	nucleus	50.14	57.83
CDY22442	Canola	nucleus	44.04	57.82
KRH57983	Soybean	nucleus	47.09	57.63
CDX75635	Canola	nucleus	47.09	56.86
CDY44045	Canola	nucleus	44.6	56.49
CDY38933	Canola	nucleus	45.43	56.16
Bra032176.1-P	Field mustard	nucleus	45.15	55.82
CDX89554	Canola	nucleus	45.15	55.63
CDX69287	Canola	nucleus	46.26	54.58
AT2G23290.1	Thale cress	nucleus	46.26	54.05
Solyc04g078420.1.1	Tomato	nucleus	48.75	53.66
Bra010593.1-P	Field mustard	nucleus	45.15	53.44
Os09t0106700-01	Rice	nucleus	46.54	52.66
Zm00001d005300_P001	Maize	nucleus	41.55	52.63
AT4G37260.1	Thale cress	nucleus	46.26	52.19
Bra011749.1-P	Field mustard	nucleus	47.09	51.83
TraesCS5B01G157300.1	Wheat	nucleus	46.81	50.45
TraesCS5A01G159600.1	Wheat	nucleus	46.54	50.0
Zm00001d019712_P001	Maize	nucleus	47.09	49.28
TraesCS5D01G164600.1	Wheat	nucleus	46.26	48.69
EER98550	Sorghum	nucleus	47.92	47.27
Solyc04g079360.1.1	Tomato	nucleus	28.81	41.27
HORVU5Hr1G049880.1	Barley	plastid	45.15	38.44
Solyc09g011780.2.1	Tomato	nucleus	28.53	27.11
Solyc05g052850.2.1	Tomato	nucleus	24.93	24.06
Solyc04g064540.2.1	Tomato	nucleus	18.84	22.01
Solyc10g081320.1.1	Tomato	nucleus	19.39	21.94
Solyc05g007870.1.1	Tomato	nucleus	19.39	16.79

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4BD89	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF940
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc02g092930.1	EnsemblPlants:Solyc02g092930.1.1	UniParc:UPI00027682FE
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:53876828..53877913

Molecular Weight (calculated)

40044.1 Da

IEP (calculated)

7.934

GRAVY (calculated)

-0.726

Length

361 amino acids

Sequence
(BLAST)

001: MDRVKGPWSP EEDELLQQLV QKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF TPEEDETIIR AHARFGNKWA TIARLLNGRT DNAIKNHWNS
101: TLKRKCSSLS ADEGNELADQ LFENQQPPLK RSVSAGSAMP VTGFHFSPGS PSGSDSDSSL HVTSSSQSQV FKPVARTGGV FPPSIDISSP PVDPPTSLSL
201: SLPGVDLAES SNRSADSTQS KNPFQWLLPP MQIPPPPPPP PPPLATTVPF ERVSAIQQSL QNPDFGQNSG GEQPDKVFVP FSQELLGVMQ EMIKTEVRNY
301: MMGVEQKQQY QRQHYQQQQP QQFQQQNHQL PSGLGLGLCM QQASDCFRDR AANRMGLSKF D

Best Arabidopsis Sequence Match ( AT5G67300.1 )
(BLAST)

001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE

Arabidopsis Description

MYB44MYBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.