Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069921 | Potato | nucleus | 91.71 | 91.71 |
| GSMUA_Achr9P03720_001 | Banana | nucleus | 40.64 | 47.2 |
| VIT_13s0019g03200.t01 | Wine grape | nucleus | 47.06 | 46.56 |
| GSMUA_Achr6P33470_001 | Banana | nucleus | 27.01 | 44.89 |
| Solyc09g011780.2.1 | Tomato | nucleus | 45.45 | 44.74 |
| KRH15016 | Soybean | nucleus | 45.45 | 43.26 |
| CDX72208 | Canola | nucleus | 41.44 | 42.12 |
| CDY27271 | Canola | nucleus | 41.98 | 42.09 |
| Bra007186.1-P | Field mustard | nucleus | 41.71 | 42.05 |
| CDY20494 | Canola | nucleus | 39.57 | 40.22 |
| AT3G55730.1 | Thale cress | nucleus | 42.78 | 40.1 |
| Bra005006.1-P | Field mustard | nucleus | 40.64 | 38.19 |
| CDX74825 | Canola | nucleus | 40.11 | 37.41 |
| KRH73115 | Soybean | nucleus | 39.57 | 37.09 |
| Zm00001d012379_P001 | Maize | nucleus | 38.5 | 35.91 |
| OQU87862 | Sorghum | nucleus | 38.24 | 35.84 |
| Os01t0850400-01 | Rice | nucleus | 37.43 | 33.9 |
| AT2G39880.1 | Thale cress | nucleus | 33.16 | 33.79 |
| Solyc04g079360.1.1 | Tomato | nucleus | 22.19 | 32.94 |
| TraesCS3B01G397100.1 | Wheat | nucleus | 38.24 | 30.56 |
| TraesCS3A01G365200.1 | Wheat | nucleus | 37.43 | 30.3 |
| TraesCS3D01G358400.1 | Wheat | nucleus | 37.7 | 30.06 |
| HORVU3Hr1G085570.1 | Barley | plastid | 36.9 | 29.93 |
| GSMUA_Achr5P28780_001 | Banana | nucleus | 31.28 | 29.47 |
| Solyc04g078420.1.1 | Tomato | nucleus | 23.8 | 27.13 |
| Solyc02g092930.1.1 | Tomato | nucleus | 24.06 | 24.93 |
| Solyc04g064540.2.1 | Tomato | nucleus | 18.72 | 22.65 |
| Solyc10g081320.1.1 | Tomato | nucleus | 17.91 | 21.0 |
| Solyc05g007870.1.1 | Tomato | nucleus | 19.25 | 17.27 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009723 |
| GO:GO:0009733 | GO:GO:0009737 | GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:K4C1W5 |
| InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF524 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc05g052850.2 | EnsemblPlants:Solyc05g052850.2.1 | UniParc:UPI0002765F1D | SEG:seg |
Description
No Description!
Coordinates
chr5:-:63036989..63040430
Molecular Weight (calculated)
40623.0 Da
IEP (calculated)
7.260
GRAVY (calculated)
-0.472
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEKAEQNGY AAAGEGHGGD GGCSLVDAGD AMLNGGRGSR VSSGRVKEPW SPEEDAVLTE LVNKFGARNW SMIAQGIAGR SGKSCRLRWC NQLDPVLKRK
101: PFTDEEDHII INAHGVHGNK WAAIAKLLPG RTDNAIKNHW NSTLRRRFAG VWRVKPIRSM MLDDSSIYKA RALSEETMSC EGVNQTKPLE MLEVSRTECI
201: PSQSENKAQI YEMCCIPEET PHFTSERSRP TSIGNSDPPA LHPTQKIGAF NVYNPSVTSR IVPMQGPLIH TFSPDFDICK LLEGVSGETI VPQGCGHGCC
301: AATSKSSSKS SLLGPEFVDY EEHPPLLSHE LASMATDLNN IAWIKSGLEK AGKLSSLATS QRNSQRSSAQ VGFG
101: PFTDEEDHII INAHGVHGNK WAAIAKLLPG RTDNAIKNHW NSTLRRRFAG VWRVKPIRSM MLDDSSIYKA RALSEETMSC EGVNQTKPLE MLEVSRTECI
201: PSQSENKAQI YEMCCIPEET PHFTSERSRP TSIGNSDPPA LHPTQKIGAF NVYNPSVTSR IVPMQGPLIH TFSPDFDICK LLEGVSGETI VPQGCGHGCC
301: AATSKSSSKS SLLGPEFVDY EEHPPLLSHE LASMATDLNN IAWIKSGLEK AGKLSSLATS QRNSQRSSAQ VGFG
001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
Arabidopsis Description
MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.