Factsheet for PGSC0003DMT400069921

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052850.2.1	Tomato	nucleus	91.71	91.71
VIT_13s0019g03200.t01	Wine grape	nucleus	47.59	47.09
GSMUA_Achr9P03720_001	Banana	nucleus	40.37	46.89
PGSC0003DMT400052395	Potato	nucleus	46.52	45.91
GSMUA_Achr6P33470_001	Banana	nucleus	26.74	44.44
KRH15016	Soybean	nucleus	44.92	42.75
CDY27271	Canola	nucleus	42.25	42.36
CDX72208	Canola	nucleus	41.44	42.12
Bra007186.1-P	Field mustard	nucleus	41.71	42.05
AT3G55730.1	Thale cress	nucleus	42.78	40.1
CDY20494	Canola	nucleus	39.04	39.67
Bra005006.1-P	Field mustard	nucleus	40.37	37.94
CDX74825	Canola	nucleus	39.84	37.16
KRH73115	Soybean	nucleus	39.57	37.09
OQU87862	Sorghum	nucleus	38.5	36.09
Zm00001d012379_P001	Maize	nucleus	38.5	35.91
AT2G39880.1	Thale cress	nucleus	33.96	34.6
Os01t0850400-01	Rice	nucleus	37.43	33.9
PGSC0003DMT400020635	Potato	nucleus	22.73	33.86
TraesCS3B01G397100.1	Wheat	nucleus	38.24	30.56
TraesCS3A01G365200.1	Wheat	nucleus	37.43	30.3
GSMUA_Achr5P28780_001	Banana	nucleus	32.09	30.23
TraesCS3D01G358400.1	Wheat	nucleus	37.7	30.06
HORVU3Hr1G085570.1	Barley	plastid	36.9	29.93
PGSC0003DMT400008569	Potato	nucleus	24.06	28.12
PGSC0003DMT400064306	Potato	mitochondrion, nucleus	25.67	25.88
PGSC0003DMT400079714	Potato	nucleus	16.84	25.82
PGSC0003DMT400063862	Potato	nucleus	17.91	22.19
PGSC0003DMT400072258	Potato	nucleus	17.11	19.94
PGSC0003DMT400047415	Potato	nucleus	18.98	16.55

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102591034	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009723
GO:GO:0009733	GO:GO:0009737	GO:GO:0009739	GO:GO:0009751	GO:GO:0009753	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M1CLE1	InterPro:Myb_dom	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400027190	PGSC:PGSC0003DMG400027190
EnsemblPlants:PGSC0003DMT400069921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF524	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00029681A7	RefSeq:XP_006355677.1	SEG:seg	:	:

Description

R2r3-myb transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400027190]

Coordinates

chr5:-:48135780..48139477

Molecular Weight (calculated)

40666.9 Da

IEP (calculated)

6.727

GRAVY (calculated)

-0.512

Length

374 amino acids

Sequence
(BLAST)

001: MNEKTEQNGY AAAGDGDGGD GGCTLVDAGD AMLHGGRGST VSSGRVKEPW SPEEDGILTE LVNKFGARNW SMIAQGIAGR SGKSCRLRWC NQLDPVLKRK
101: PFTDEEDHII INAHAVHGNK WAAIAKLLPG RTDNAIKNHW NSTLRRRFAG LWRVKPVCSM MLDDSSIYKA RALSEETMSR EDVNQIKPLE MQEVSRTECM
201: TSQSEDKDQI YGTCGIPEKT PHFAFERSRP TSMGNSDPPA SHPTEKIGAF NVYNPSVTSR IVPMQGPLIH TFSPDFDICK LLEGVSGETI VPQGCGHGCC
301: AATTKSTSKS SLLGPEFVDY EEHPPLLSHE LASMATDLNN IAWIKSGLEK AGKLSSLATS QRNSQRSSAQ VGFG

Best Arabidopsis Sequence Match ( AT3G55730.1 )
(BLAST)

001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS

Arabidopsis Description

MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.