Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27271 | Canola | nucleus | 97.55 | 96.25 |
| Bra007186.1-P | Field mustard | nucleus | 97.01 | 96.23 |
| AT3G55730.1 | Thale cress | nucleus | 78.26 | 72.18 |
| CDY20494 | Canola | nucleus | 49.46 | 49.46 |
| CDX74825 | Canola | nucleus | 50.0 | 45.89 |
| VIT_13s0019g03200.t01 | Wine grape | nucleus | 43.21 | 42.06 |
| GSMUA_Achr6P33470_001 | Banana | nucleus | 25.54 | 41.78 |
| Solyc05g052850.2.1 | Tomato | nucleus | 42.12 | 41.44 |
| PGSC0003DMT400069921 | Potato | nucleus | 42.12 | 41.44 |
| CDX83109 | Canola | nucleus | 18.21 | 41.36 |
| GSMUA_Achr9P03720_001 | Banana | nucleus | 36.14 | 41.3 |
| KRH15016 | Soybean | nucleus | 41.03 | 38.42 |
| CDY07907 | Canola | nucleus | 33.97 | 37.65 |
| CDX73963 | Canola | nucleus | 33.7 | 37.01 |
| CDY35992 | Canola | nucleus | 15.22 | 35.67 |
| CDY21728 | Canola | nucleus | 14.67 | 34.39 |
| CDY12830 | Canola | nucleus | 23.37 | 33.99 |
| KRH73115 | Soybean | nucleus | 36.68 | 33.83 |
| OQU87862 | Sorghum | nucleus | 35.87 | 33.08 |
| CDY01420 | Canola | nucleus | 23.64 | 33.08 |
| Zm00001d012379_P001 | Maize | nucleus | 35.87 | 32.92 |
| Os01t0850400-01 | Rice | nucleus | 36.41 | 32.45 |
| CDY22442 | Canola | nucleus | 24.18 | 32.36 |
| CDY44045 | Canola | nucleus | 24.46 | 31.58 |
| CDX72621 | Canola | nucleus | 22.55 | 31.32 |
| CDY30608 | Canola | nucleus | 22.55 | 31.32 |
| CDX83880 | Canola | nucleus | 15.49 | 31.32 |
| CDY57355 | Canola | nucleus | 23.64 | 31.3 |
| CDY38933 | Canola | nucleus | 24.73 | 31.16 |
| CDX75635 | Canola | nucleus | 25.27 | 31.1 |
| CDY29542 | Canola | nucleus | 22.28 | 30.94 |
| CDY23023 | Canola | nucleus | 24.18 | 30.69 |
| TraesCS3A01G365200.1 | Wheat | nucleus | 38.32 | 30.52 |
| CDX69287 | Canola | nucleus | 25.27 | 30.39 |
| CDX89554 | Canola | nucleus | 24.18 | 30.38 |
| CDY02098 | Canola | nucleus | 23.91 | 30.03 |
| TraesCS3B01G397100.1 | Wheat | nucleus | 38.04 | 29.91 |
| TraesCS3D01G358400.1 | Wheat | nucleus | 38.04 | 29.85 |
| HORVU3Hr1G085570.1 | Barley | plastid | 36.96 | 29.5 |
| GSMUA_Achr5P28780_001 | Banana | nucleus | 30.71 | 28.46 |
| CDY70901 | Canola | nucleus | 21.74 | 27.97 |
| CDY70773 | Canola | nucleus | 21.74 | 27.97 |
| CDX72988 | Canola | nucleus | 16.3 | 26.55 |
| CDY58312 | Canola | nucleus | 16.85 | 26.5 |
| CDX96475 | Canola | nucleus | 16.3 | 26.32 |
| CDX82074 | Canola | nucleus | 16.58 | 26.18 |
| CDY43567 | Canola | nucleus | 15.22 | 25.81 |
| CDX96742 | Canola | nucleus | 16.58 | 25.21 |
| CDX68566 | Canola | nucleus | 21.47 | 25.16 |
| CDY30264 | Canola | nucleus | 17.66 | 25.0 |
| CDY71713 | Canola | nucleus | 15.49 | 24.78 |
| CDY44415 | Canola | nucleus | 17.39 | 24.52 |
| CDY46114 | Canola | nucleus | 16.03 | 24.48 |
| CDX72405 | Canola | nucleus | 16.03 | 24.48 |
| CDY67868 | Canola | nucleus | 19.57 | 24.16 |
| CDY21727 | Canola | nucleus | 16.3 | 23.9 |
| CDY67808 | Canola | nucleus | 10.33 | 23.9 |
| CDX81853 | Canola | nucleus | 16.03 | 23.89 |
| CDY07345 | Canola | nucleus | 19.29 | 23.83 |
| CDY20004 | Canola | nucleus | 18.48 | 23.69 |
| CDY66025 | Canola | nucleus | 18.48 | 23.61 |
| CDX68977 | Canola | nucleus | 16.03 | 23.6 |
| CDX75353 | Canola | nucleus | 16.03 | 23.51 |
| CDY28302 | Canola | nucleus | 15.49 | 22.71 |
| CDY40941 | Canola | nucleus | 19.02 | 21.88 |
| CDX95921 | Canola | nucleus | 18.48 | 21.25 |
| CDY69058 | Canola | nucleus | 15.22 | 21.21 |
| CDY50737 | Canola | nucleus | 19.57 | 20.93 |
| CDY66170 | Canola | nucleus | 17.66 | 20.7 |
| CDX85443 | Canola | nucleus | 17.12 | 20.52 |
| CDX70776 | Canola | nucleus | 17.39 | 20.45 |
| CDX78761 | Canola | nucleus | 17.39 | 20.45 |
| CDY46444 | Canola | nucleus | 19.57 | 20.4 |
| CDY02687 | Canola | nucleus | 17.12 | 20.32 |
| CDY44993 | Canola | nucleus | 19.29 | 20.11 |
| CDY16884 | Canola | nucleus | 16.58 | 19.55 |
| CDY38460 | Canola | nucleus | 17.12 | 19.44 |
| CDX74436 | Canola | nucleus | 17.66 | 18.01 |
| CDX83108 | Canola | cytosol | 0.54 | 5.13 |
Protein Annotations
| EnsemblPlants:CDX72208 | EnsemblPlantsGene:GSBRNA2T00156044001 | Gene3D:1.10.10.60 | GO:A0A078CB25 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF524 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX72208 | ProteinID:CDX72208.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EABE50 | MapMan:15.5.2.1 | : |
Description
BnaC08g26660D
Coordinates
chrLK031795:+:3009651..3011198
Molecular Weight (calculated)
40826.1 Da
IEP (calculated)
5.945
GRAVY (calculated)
-0.581
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRSEPLPFP SSADSNEVTT AAAGDSSGGG YEIKSKVKGP WSTEEDAVLT KLVSKLGPRN WSLIARGIPG RSGKSCRLRW CNQLDPCLKR KPFSDEEDHM
101: IISAHAIHGN KWAVIAKMLP GRTDNAIKNH WNSTLRRKYA DLWKNSNQVT TAYIKNENVE QQLPQEEIVS PPEVPQVVDV PMYDEPTQVL DDVTMDDASP
201: NEPQEQAPIE KSSIPVFRPV ARAGAFRVYN PNSQRNGYRD QNVVPCEGPL IQAAKPDSLA GKFLQSLCGE PNIPSKCGHG CSTHPAEPGK SVLGAEFVDY
301: EEPCPVFNQE LISIATDLNN IAWIKSGLDN AIVREAEQNL KMDQITFNDP RIRFSGMMPR QHFFCARS
101: IISAHAIHGN KWAVIAKMLP GRTDNAIKNH WNSTLRRKYA DLWKNSNQVT TAYIKNENVE QQLPQEEIVS PPEVPQVVDV PMYDEPTQVL DDVTMDDASP
201: NEPQEQAPIE KSSIPVFRPV ARAGAFRVYN PNSQRNGYRD QNVVPCEGPL IQAAKPDSLA GKFLQSLCGE PNIPSKCGHG CSTHPAEPGK SVLGAEFVDY
301: EEPCPVFNQE LISIATDLNN IAWIKSGLDN AIVREAEQNL KMDQITFNDP RIRFSGMMPR QHFFCARS
001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
Arabidopsis Description
MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.