Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26800702
|
gfp PMID:
26800702
doi
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China jiangyq@nwafu.edu.cn., State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036048.1-P | Field mustard | nucleus | 97.36 | 96.99 |
| CDY57355 | Canola | nucleus | 94.72 | 90.29 |
| CDX83109 | Canola | nucleus | 46.04 | 75.31 |
| CDY23023 | Canola | nucleus | 80.38 | 73.45 |
| CDY02098 | Canola | nucleus | 79.25 | 71.67 |
| AT3G50060.1 | Thale cress | nucleus | 78.87 | 69.44 |
| CDY12830 | Canola | nucleus | 56.6 | 59.29 |
| CDY01420 | Canola | nucleus | 57.36 | 57.79 |
| CDX68566 | Canola | nucleus | 66.42 | 56.05 |
| CDY43567 | Canola | nucleus | 43.02 | 52.53 |
| CDX72621 | Canola | nucleus | 51.32 | 51.32 |
| CDX83108 | Canola | cytosol | 7.55 | 51.28 |
| CDY29542 | Canola | nucleus | 50.57 | 50.57 |
| CDY22442 | Canola | nucleus | 51.7 | 49.82 |
| KRH61351 | Soybean | nucleus | 47.55 | 48.65 |
| KRH15420 | Soybean | nucleus | 49.81 | 48.35 |
| KRH05621 | Soybean | nucleus | 48.68 | 48.13 |
| CDY44045 | Canola | nucleus | 51.7 | 48.07 |
| CDX75635 | Canola | nucleus | 53.96 | 47.83 |
| CDY38933 | Canola | nucleus | 52.08 | 47.26 |
| CDX89554 | Canola | nucleus | 51.7 | 46.76 |
| CDX69287 | Canola | nucleus | 53.96 | 46.73 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 46.42 | 45.72 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 47.17 | 43.1 |
| GSMUA_Achr9P22600_001 | Banana | nucleus | 46.04 | 42.36 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 42.64 | 40.07 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 44.91 | 40.07 |
| GSMUA_Achr3P28230_001 | Banana | nucleus | 43.4 | 39.93 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 40.0 | 39.85 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 45.28 | 39.74 |
| Zm00001d005300_P001 | Maize | nucleus | 42.64 | 39.65 |
| VIT_03s0180g00210.t01 | Wine grape | nucleus | 43.77 | 38.28 |
| Os09t0106700-01 | Rice | nucleus | 46.04 | 38.24 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 42.26 | 37.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.38 | 37.81 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 46.42 | 36.72 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 45.66 | 36.01 |
| Zm00001d019712_P001 | Maize | nucleus | 46.79 | 35.94 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 46.04 | 35.57 |
| CDY21728 | Canola | nucleus | 20.38 | 34.39 |
| EER98550 | Sorghum | nucleus | 46.04 | 33.33 |
| CDY35992 | Canola | nucleus | 19.62 | 33.12 |
| CDX83880 | Canola | nucleus | 20.0 | 29.12 |
| HORVU5Hr1G049880.1 | Barley | plastid | 44.53 | 27.83 |
| CDY58312 | Canola | nucleus | 24.15 | 27.35 |
| CDX72988 | Canola | nucleus | 23.02 | 26.99 |
| CDX96475 | Canola | nucleus | 23.02 | 26.75 |
| CDX82074 | Canola | nucleus | 23.4 | 26.61 |
| CDY71713 | Canola | nucleus | 23.02 | 26.52 |
| CDX73963 | Canola | nucleus | 31.7 | 25.07 |
| CDY07907 | Canola | nucleus | 31.32 | 25.0 |
| CDY44415 | Canola | nucleus | 24.53 | 24.9 |
| CDY46114 | Canola | nucleus | 22.64 | 24.9 |
| CDX72405 | Canola | nucleus | 22.64 | 24.9 |
| CDX68977 | Canola | nucleus | 22.64 | 24.0 |
| CDX75353 | Canola | nucleus | 22.64 | 23.9 |
| CDY28302 | Canola | nucleus | 22.64 | 23.9 |
| CDX81853 | Canola | nucleus | 21.51 | 23.08 |
| CDX96742 | Canola | nucleus | 20.75 | 22.73 |
| CDX72208 | Canola | nucleus | 31.32 | 22.55 |
| CDY27271 | Canola | nucleus | 31.7 | 22.52 |
| CDY20004 | Canola | nucleus | 23.77 | 21.95 |
| CDY30264 | Canola | nucleus | 21.51 | 21.92 |
| CDY21727 | Canola | nucleus | 20.75 | 21.91 |
| CDY66025 | Canola | nucleus | 23.77 | 21.88 |
| CDY07345 | Canola | nucleus | 23.77 | 21.14 |
| CDY20494 | Canola | nucleus | 29.06 | 20.92 |
| CDY69058 | Canola | nucleus | 20.75 | 20.83 |
| CDY67868 | Canola | nucleus | 23.4 | 20.81 |
| CDY67808 | Canola | nucleus | 12.45 | 20.75 |
| CDY16884 | Canola | nucleus | 24.15 | 20.51 |
| CDY66170 | Canola | nucleus | 23.77 | 20.06 |
| CDX95921 | Canola | nucleus | 24.15 | 20.0 |
| CDY38460 | Canola | nucleus | 24.15 | 19.75 |
| CDY40941 | Canola | nucleus | 23.77 | 19.69 |
| CDY02687 | Canola | nucleus | 23.02 | 19.68 |
| CDX85443 | Canola | nucleus | 22.64 | 19.54 |
| CDX74825 | Canola | nucleus | 29.06 | 19.2 |
| CDX78761 | Canola | nucleus | 21.89 | 18.53 |
| CDX70776 | Canola | nucleus | 21.89 | 18.53 |
| CDY50737 | Canola | nucleus | 23.77 | 18.31 |
| CDY46444 | Canola | nucleus | 24.15 | 18.13 |
| CDY44993 | Canola | nucleus | 24.15 | 18.13 |
| CDY70773 | Canola | nucleus | 18.49 | 17.13 |
| CDY70901 | Canola | nucleus | 18.49 | 17.13 |
| CDX74436 | Canola | nucleus | 21.51 | 15.79 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078H1F7 | UniProt:A0A078H1F7 | EnsemblPlants:CDY30608 | ProteinID:CDY30608 |
| ProteinID:CDY30608.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00045893001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF691 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF321D | SEG:seg |
Description
BnaAnng03830DBnaAnng03830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1F7]
Coordinates
chrLK032256:+:187590..188548
Molecular Weight (calculated)
29520.5 Da
IEP (calculated)
6.795
GRAVY (calculated)
-0.836
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRVKGPWS QEEDEQLRLM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSAEEDETIV SARAKFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSDG NPTAEEEQDP AKKRRSMSSE SVPPVDTGLY MSPESPADVG SDSSAVPPQR FKPMTSSSEE DPATTLSLSL SVPVSQESRN TGSSDNSLPF
201: PRFERQMKIN VEERGGEARR AEFMTVVHEM VKAEVRSYMA EMQRNNAGGF VVGGFYDSGI TPKVE
101: STLKRKCSDG NPTAEEEQDP AKKRRSMSSE SVPPVDTGLY MSPESPADVG SDSSAVPPQR FKPMTSSSEE DPATTLSLSL SVPVSQESRN TGSSDNSLPF
201: PRFERQMKIN VEERGGEARR AEFMTVVHEM VKAEVRSYMA EMQRNNAGGF VVGGFYDSGI TPKVE
001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E
Arabidopsis Description
MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.