Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027232.1-P | Field mustard | nucleus | 93.64 | 83.51 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 87.86 | 78.35 |
| AT3G15540.1 | Thale cress | nucleus | 87.86 | 77.16 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 87.86 | 77.16 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 86.13 | 76.8 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 87.28 | 76.65 |
| CDY53305 | Canola | cytosol | 47.4 | 52.23 |
| KRH47514 | Soybean | nucleus | 55.49 | 51.34 |
| KRH09813 | Soybean | nucleus | 54.91 | 50.8 |
| CDY26042 | Canola | nucleus | 56.07 | 49.49 |
| KRH44390 | Soybean | nucleus | 55.49 | 49.23 |
| CDY53800 | Canola | nucleus | 53.18 | 48.94 |
| KRH23504 | Soybean | nucleus | 53.18 | 48.68 |
| CDY68807 | Canola | nucleus | 54.34 | 47.96 |
| VIT_09s0002g05150.t01 | Wine grape | cytosol, nucleus, plastid | 52.6 | 47.4 |
| PGSC0003DMT400006800 | Potato | mitochondrion | 52.02 | 46.15 |
| Solyc03g120380.2.1 | Tomato | nucleus | 50.29 | 45.31 |
| CDY35493 | Canola | nucleus | 39.31 | 39.77 |
| CDY40837 | Canola | nucleus | 39.31 | 39.77 |
| CDX92972 | Canola | nucleus | 39.31 | 39.77 |
| CDY10692 | Canola | nucleus | 39.31 | 39.53 |
| CDX94876 | Canola | nucleus | 38.73 | 39.18 |
| CDY10346 | Canola | nucleus | 38.73 | 38.95 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 39.88 | 38.33 |
| CDY10069 | Canola | nucleus | 40.46 | 38.04 |
| PGSC0003DMT400042572 | Potato | nucleus | 23.7 | 37.96 |
| CDY36883 | Canola | nucleus | 37.57 | 37.79 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 39.88 | 37.1 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 39.88 | 37.1 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 40.46 | 36.65 |
| CDY53735 | Canola | nucleus | 36.42 | 36.63 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 39.88 | 36.13 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 45.09 | 33.77 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 45.09 | 33.05 |
| CDX89832 | Canola | nucleus | 42.2 | 32.59 |
| CDY18214 | Canola | nucleus | 42.2 | 32.59 |
| CDY10694 | Canola | mitochondrion | 32.37 | 32.18 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 42.2 | 31.88 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 43.35 | 31.65 |
| CDY32537 | Canola | nucleus | 41.62 | 31.58 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 41.04 | 31.14 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 41.62 | 30.38 |
| CDY40881 | Canola | cytosol | 31.79 | 30.05 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 40.46 | 30.04 |
| CDY47148 | Canola | nucleus | 39.88 | 29.61 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 41.62 | 29.27 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 39.88 | 28.75 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 39.88 | 28.75 |
| CDY50750 | Canola | nucleus, plastid | 45.66 | 27.15 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 28.32 | 27.07 |
| CDY25617 | Canola | nucleus | 40.46 | 26.32 |
| CDY06836 | Canola | nucleus | 38.15 | 26.19 |
| CDX89499 | Canola | nucleus | 39.88 | 25.46 |
| CDY68170 | Canola | nucleus, plastid | 42.77 | 23.79 |
| CDY18679 | Canola | plastid | 42.77 | 23.72 |
| CDY37837 | Canola | mitochondrion | 39.88 | 23.31 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 42.2 | 22.19 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 42.2 | 21.99 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 34.68 | 21.74 |
| CDY63072 | Canola | nucleus | 41.62 | 18.09 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078JVY7 | UniProt:A0A078JVY7 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY71748 | ProteinID:CDY71748 | ProteinID:CDY71748.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00019979001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF87 | SUPFAM:SSF54277 | UniParc:UPI0004EE70C4 |
Description
BnaCnng74250DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078JVY7]
Coordinates
chrLK047285:-:70..1243
Molecular Weight (calculated)
18953.6 Da
IEP (calculated)
4.654
GRAVY (calculated)
-0.336
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKGGVEHEI TELRLGLPGR DVTEKMMKKR GFTEMIMTSS GSNSDESGVV SGGDVEKINE SPAAKSEVVG WPPVCSYRRK NSCKEAWTTK VGLGYVKVSM
101: DGVPYLRKID LGSSQGYDDL AFALDKLFGV RGIGVALKDG DNCEYVTIYE DKDGDWMLAG DVPWGYICSY LLT
101: DGVPYLRKID LGSSQGYDDL AFALDKLFGV RGIGVALKDG DNCEYVTIYE DKDGDWMLAG DVPWGYICSY LLT
001: MEKEGLGLEI TELRLGLPGR DVAEKMMKKR AFTEMNMTSS GSNSDQCESG VVSSGGDAEK VNDSPAAKSQ VVGWPPVCSY RKKNSCKEAS TTKVGLGYVK
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE
Arabidopsis Description
IAA19Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.