Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21111 | Canola | cytosol, nucleus, plastid | 96.2 | 96.61 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 86.5 | 88.74 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 88.19 | 88.56 |
| CDY50750 | Canola | nucleus, plastid | 87.34 | 71.13 |
| CDY10694 | Canola | mitochondrion | 47.26 | 64.37 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 60.76 | 60.76 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 57.81 | 59.83 |
| CDY47148 | Canola | nucleus | 58.65 | 59.66 |
| CDY32537 | Canola | nucleus | 57.38 | 59.65 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 57.38 | 59.65 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 60.34 | 59.58 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 60.34 | 59.58 |
| CDX89832 | Canola | nucleus | 56.12 | 59.38 |
| CDY18214 | Canola | nucleus | 56.12 | 59.38 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 61.6 | 59.35 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 58.23 | 59.23 |
| GSMUA_Achr10P... | Banana | nucleus | 59.07 | 58.09 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 58.65 | 56.97 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 59.92 | 56.13 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 56.96 | 56.02 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 59.49 | 55.95 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 59.07 | 55.56 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 56.96 | 55.56 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 57.81 | 55.24 |
| CDY10692 | Canola | nucleus | 38.4 | 52.91 |
| CDX92972 | Canola | nucleus | 37.97 | 52.63 |
| CDX94876 | Canola | nucleus | 37.97 | 52.63 |
| Os03t0633500-01 | Rice | cytosol | 51.48 | 52.36 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 42.19 | 52.36 |
| CDY10346 | Canola | nucleus | 37.97 | 52.33 |
| CDY53305 | Canola | cytosol | 34.6 | 52.23 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 51.05 | 52.16 |
| CDY40837 | Canola | nucleus | 37.55 | 52.05 |
| CDY35493 | Canola | nucleus | 37.55 | 52.05 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 51.05 | 51.93 |
| EER90896 | Sorghum | nucleus | 51.48 | 51.91 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 41.77 | 51.83 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 55.27 | 51.78 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 51.05 | 51.71 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 40.51 | 51.61 |
| EES17334 | Sorghum | cytosol | 61.18 | 51.6 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 59.92 | 51.45 |
| CDY36883 | Canola | nucleus | 37.13 | 51.16 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 38.82 | 51.11 |
| Zm00001d033976_P002 | Maize | nucleus | 51.05 | 51.05 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 51.05 | 51.05 |
| Os03t0742900-01 | Rice | vacuole | 50.63 | 50.85 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 39.66 | 50.54 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 56.12 | 50.38 |
| CDY40881 | Canola | cytosol | 38.82 | 50.27 |
| CDY10069 | Canola | nucleus | 38.82 | 50.0 |
| Zm00001d013302_P002 | Maize | nucleus | 48.1 | 50.0 |
| CDY53735 | Canola | nucleus | 35.87 | 49.42 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 52.74 | 49.41 |
| Os12t0601300-01 | Rice | nucleus | 57.38 | 49.1 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 39.24 | 47.94 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 38.4 | 46.91 |
| CDY06836 | Canola | nucleus | 49.79 | 46.83 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 35.02 | 45.86 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 37.55 | 45.18 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 37.55 | 45.18 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 51.9 | 43.77 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 31.65 | 43.35 |
| CDY68807 | Canola | nucleus | 35.02 | 42.35 |
| CDY26042 | Canola | nucleus | 35.02 | 42.35 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 54.85 | 41.27 |
| CDY25617 | Canola | nucleus | 45.57 | 40.6 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 51.48 | 40.0 |
| Zm00001d041416_P001 | Maize | nucleus | 57.81 | 39.83 |
| CDX89499 | Canola | nucleus | 44.73 | 39.11 |
| CDY53800 | Canola | nucleus | 29.96 | 37.77 |
| CDY37837 | Canola | mitochondrion | 46.84 | 37.5 |
| CDY68170 | Canola | nucleus, plastid | 48.52 | 36.98 |
| CDY18679 | Canola | plastid | 47.26 | 35.9 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 40.51 | 34.78 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 47.26 | 34.04 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 47.68 | 34.04 |
| CDY63072 | Canola | nucleus | 56.96 | 33.92 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078GXU3 | UniProt:A0A078GXU3 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY30017 | ProteinID:CDY30017 | ProteinID:CDY30017.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00044551001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | UniParc:UPI0004EE35F3 |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g39910DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXU3]
Coordinates
chrLK032247:-:456852..458650
Molecular Weight (calculated)
25792.0 Da
IEP (calculated)
8.975
GRAVY (calculated)
-0.379
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MINFEATELR LGLPGENHGG GMAAKNNGKR GFSETVDLKL NLSSTAMDSV SELDLVNMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGPKP TTGDAFQATE
101: NTSSSNGATS SASIGATAAY VKISMDGAPY LRKIDLKLYK AYQDLSDTLS KMFSSFTIGS YGPQGMKDIV NEGKLMIDLL NGSDYVPTYE DKDGDWMLVG
201: DVPWEMFVDS CKRIRIMKGS EAIGLAPRAL EKCKNRR
101: NTSSSNGATS SASIGATAAY VKISMDGAPY LRKIDLKLYK AYQDLSDTLS KMFSSFTIGS YGPQGMKDIV NEGKLMIDLL NGSDYVPTYE DKDGDWMLVG
201: DVPWEMFVDS CKRIRIMKGS EAIGLAPRAL EKCKNRR
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
Arabidopsis Description
IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.