Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G386800.1 | Wheat | nucleus | 99.57 | 99.15 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 98.71 | 99.14 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 98.28 | 96.62 |
| EER90896 | Sorghum | nucleus | 85.84 | 85.11 |
| Os03t0742900-01 | Rice | vacuole | 84.55 | 83.47 |
| Zm00001d033976_P002 | Maize | nucleus | 83.26 | 81.86 |
| Zm00001d013302_P002 | Maize | nucleus | 78.11 | 79.82 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 47.21 | 64.71 |
| CDY10694 | Canola | mitochondrion | 43.78 | 58.62 |
| PGSC0003DMT400041976 | Potato | nucleus | 52.79 | 57.75 |
| KRG92683 | Soybean | nucleus | 55.79 | 57.27 |
| Solyc06g053830.2.1 | Tomato | nucleus | 52.36 | 55.96 |
| KRH34377 | Soybean | nucleus | 56.22 | 54.81 |
| Solyc06g008590.2.1 | Tomato | nucleus | 48.93 | 54.81 |
| PGSC0003DMT400013627 | Potato | nucleus | 49.79 | 54.21 |
| Bra040398.1-P | Field mustard | nucleus | 53.65 | 54.11 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 53.65 | 54.11 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 58.37 | 53.75 |
| CDY47148 | Canola | nucleus | 53.65 | 53.65 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 54.08 | 53.39 |
| Bra039855.1-P | Field mustard | nucleus | 53.22 | 53.22 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 53.65 | 52.97 |
| KRH32099 | Soybean | nucleus | 56.22 | 52.82 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 52.79 | 52.79 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 53.65 | 52.74 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 53.65 | 52.74 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 54.94 | 52.67 |
| KRG96977 | Soybean | nucleus | 51.93 | 52.61 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 53.65 | 52.52 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 54.51 | 52.48 |
| Bra040122.1-P | Field mustard | nucleus | 50.64 | 52.44 |
| KRH68738 | Soybean | nucleus | 54.51 | 52.26 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 54.51 | 52.26 |
| CDX89832 | Canola | nucleus | 50.21 | 52.23 |
| Bra015298.1-P | Field mustard | nucleus | 49.79 | 51.79 |
| CDY18214 | Canola | nucleus | 49.79 | 51.79 |
| Solyc09g083290.2.1 | Tomato | nucleus | 52.36 | 51.69 |
| Bra032520.1-P | Field mustard | nucleus | 50.21 | 51.54 |
| CDY32537 | Canola | nucleus | 50.21 | 51.32 |
| PGSC0003DMT400015610 | Potato | nucleus | 52.36 | 51.26 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 52.79 | 51.25 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 52.79 | 51.25 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 51.93 | 51.05 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 54.51 | 51.0 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 49.79 | 50.88 |
| KRH67289 | Soybean | nucleus | 55.36 | 50.79 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 49.79 | 50.66 |
| Bra030560.1-P | Field mustard | nucleus | 49.79 | 50.66 |
| Solyc01g097290.2.1 | Tomato | nucleus | 54.51 | 50.6 |
| AT4G14550.2 | Thale cress | nucleus | 50.64 | 50.43 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 53.22 | 50.41 |
| KRG95616 | Soybean | nucleus | 54.51 | 50.4 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 49.36 | 50.22 |
| TraesCS7A01G371500.1 | Wheat | cytosol, nucleus, plastid | 37.77 | 48.62 |
| KRH71337 | Soybean | nucleus | 33.91 | 46.47 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 44.64 | 45.02 |
| TraesCS7A01G331100.1 | Wheat | nucleus | 46.35 | 45.0 |
| TraesCS3A01G121300.2 | Wheat | nucleus | 38.2 | 44.06 |
| TraesCS5A01G058700.1 | Wheat | cytosol | 39.91 | 43.46 |
| CDY50750 | Canola | nucleus, plastid | 53.65 | 42.96 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 36.05 | 39.62 |
| TraesCS3A01G155200.1 | Wheat | cytosol | 41.63 | 39.59 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 55.79 | 39.27 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 51.07 | 39.02 |
| TraesCS1A01G118400.2 | Wheat | cytosol | 33.05 | 37.93 |
| TraesCS3A01G270000.1 | Wheat | nucleus, plastid | 39.48 | 35.25 |
| TraesCS1A01G390200.1 | Wheat | plastid | 38.2 | 34.1 |
| CDY63072 | Canola | nucleus | 51.07 | 29.9 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF21 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS5A01G382600 | EnsemblPlants:TraesCS5A01G382600.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5A:-:580465293..580467427
Molecular Weight (calculated)
24887.7 Da
IEP (calculated)
9.191
GRAVY (calculated)
-0.553
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGADVDVGT ELRLGLPGGG AEAAKAGKRG YEDTIDLKLT LPTGGMQEDS AGKPEPAADK AKRPAEAAAA DPEKPPAPKA QAVGWPPVRS YRRNAMTVQS
101: VKIKKEEETE KQQPAAAAAA GANGSNFVKV SMDGAPYLRK VDLKMYNTYK DLSIALQKMF STFTATGNEG KMVEAVNGSD VVTTYEDKDG DWMLVGDVPW
201: EMFVASCKRL RIMKGSEAIG LAPRAKDKYK NKS
101: VKIKKEEETE KQQPAAAAAA GANGSNFVKV SMDGAPYLRK VDLKMYNTYK DLSIALQKMF STFTATGNEG KMVEAVNGSD VVTTYEDKDG DWMLVGDVPW
201: EMFVASCKRL RIMKGSEAIG LAPRAKDKYK NKS
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.