Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 3
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G161900.1 | Wheat | nucleus | 96.76 | 98.22 |
| TraesCS7A01G160800.1 | Wheat | nucleus | 96.76 | 98.12 |
| HORVU7Hr1G033820.5 | Barley | nucleus | 92.6 | 93.9 |
| Os06t0196700-02 | Rice | nucleus | 84.64 | 86.73 |
| KXG19536 | Sorghum | nucleus | 82.42 | 84.62 |
| Zm00001d045026_P002 | Maize | nucleus | 81.59 | 83.76 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 34.69 | 60.48 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 46.35 | 58.67 |
| CDX83778 | Canola | nucleus | 49.49 | 52.45 |
| CDX96672 | Canola | nucleus | 49.03 | 51.96 |
| Bra016517.1-P | Field mustard | nucleus | 48.2 | 51.58 |
| CDY26690 | Canola | nucleus | 49.58 | 51.1 |
| Bra025720.1-P | Field mustard | nucleus | 49.58 | 51.1 |
| CDY41030 | Canola | nucleus | 49.77 | 50.85 |
| KRH37536 | Soybean | nucleus | 52.91 | 50.84 |
| AT1G19220.1 | Thale cress | nucleus | 50.88 | 50.64 |
| KRH12587 | Soybean | nucleus | 52.36 | 50.45 |
| VIT_11s0016g00640.t01 | Wine grape | nucleus | 53.65 | 50.22 |
| KRH02575 | Soybean | nucleus | 52.27 | 49.74 |
| KRH19355 | Soybean | nucleus | 51.9 | 49.6 |
| Solyc07g042260.2.1 | Tomato | nucleus | 51.71 | 49.16 |
| CDX92437 | Canola | nucleus | 47.09 | 48.94 |
| PGSC0003DMT400006151 | Potato | nucleus | 51.62 | 48.23 |
| TraesCS2B01G578500.1 | Wheat | nucleus | 37.0 | 48.02 |
| Bra020125.1-P | Field mustard | nucleus | 48.66 | 47.82 |
| TraesCS7B01G363100.1 | Wheat | nucleus | 40.15 | 47.74 |
| CDY45069 | Canola | nucleus | 48.01 | 46.63 |
| AT5G20730.1 | Thale cress | nucleus | 49.86 | 46.27 |
| CDY16560 | Canola | nucleus | 44.4 | 46.07 |
| TraesCS5B01G039800.1 | Wheat | nucleus | 37.28 | 45.23 |
| TraesCS6B01G167100.1 | Wheat | nucleus | 38.39 | 44.77 |
| TraesCS7B01G138900.6 | Wheat | nucleus | 43.29 | 42.78 |
| TraesCS6B01G141300.2 | Wheat | nucleus | 44.22 | 42.26 |
| TraesCS7B01G316600.1 | Wheat | nucleus | 45.05 | 41.48 |
| Bra002327.1-P | Field mustard | nucleus | 47.92 | 36.0 |
| TraesCS2B01G519200.2 | Wheat | nucleus | 31.64 | 35.81 |
| TraesCS2B01G326400.1 | Wheat | nucleus | 21.55 | 35.63 |
| TraesCS3B01G475800.1 | Wheat | nucleus | 24.79 | 33.67 |
| TraesCS3B01G486000.2 | Wheat | nucleus | 24.14 | 31.6 |
| TraesCS3B01G190100.1 | Wheat | nucleus | 20.72 | 29.55 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009725 | GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom |
| PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF21 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | EnsemblPlantsGene:TraesCS7B01G065800 | EnsemblPlants:TraesCS7B01G065800.2 |
| TIGR:cd10017 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:71361927..71367659
Molecular Weight (calculated)
120596.0 Da
IEP (calculated)
6.771
GRAVY (calculated)
-0.585
Length
1081 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPISSTSLSN KHLCICQVHS WPLLLLYRAP RGEKKAINSE LWHACSGPLV AMPPVGSLVV YFPQGHSEQV AASMHKEVDI IPNYPSLPSK LICKLLSLTL
0101: HADSETDEVY AQMTLQPVNK YDRDAMLASE LGLKQNKQPV EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFTMQPPA QELMAKDLHD IPWKFRHIFR
0201: GQPKRHLLTT GWSVFVSTKR LLAGDSVLFI RDEKSQLLLG IRRATRPQPA LSSSVLSSDS MHIGILAAAA HAAANSSPFT IFYNPRASPS EFVIPLAKYN
0301: KALYTQVSLG MRFRMLFETE DSGVRRYMGT ITGIGDLDPV RWKNSHWRNL QVGWDESTAS ERRTRVSIWE IEPVATPFYI CPPPFFRPKL PKQPGMPDDE
0401: SEVDSAFKRA MPWLGDDFAL KDVQSQLFPG LSLVQWMAMQ QNPQMLPAGA PAVQAPYLNS SAMAMQDGMG TGNDDLMRRF NMQGQNIGLP NSQVGSKMDH
0501: PAMAQHQQQS HQLQQQQQVQ QSQQSSAVQQ QQAQLLQQNA IHLQQQQEHL QRQQSLPQQQ QEHLQRQQSQ PQQQLKTAAS MPSMEQHKLR EQQPQGGQAV
0601: SQAQMLSQIF QPSSSQLQQL GLPKSPTQRP GFPGLPTACS LQQPARGQAP QVQQAAEYQQ ALLQSQQQQL QQLSQPEMQL QLLQKIQQQN MLSQLNPQHQ
0701: SQLMQQLSQK NQEYLQQQIL QHQLSGSDAM VQFKQSHQTP SNNITGSLTP QQLARSHSAL AESEDPSSST APSANRLSPM NSLSRTHQGS RNLTDMTTSP
0801: HIDNLLQEIQ SKPDNRNKND TQSSKETIPV PNRYPVSDQL DASSATSFCL DESPREGFSF PPVCLDSNAQ VDPRDNFLIA ENVDSLMPDA LLSRGMGSGK
0901: DICNLPSGQR DHREVDNELS SAAFSSQSFG VPDMSFKPGC SGDIAVNDGG MPSQGLWNNQ TQRMRTFTKV QKRGSVGRSI DITRYTNYDE LRHDLACMFG
1001: IQGQLEDPYR MDWKLVYVDH ENDILLVGDD PWEEFVSCVK SIKILSSVEV QQMSLDGDLG GIPSQTQACS ASDDANAWRG S
0101: HADSETDEVY AQMTLQPVNK YDRDAMLASE LGLKQNKQPV EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFTMQPPA QELMAKDLHD IPWKFRHIFR
0201: GQPKRHLLTT GWSVFVSTKR LLAGDSVLFI RDEKSQLLLG IRRATRPQPA LSSSVLSSDS MHIGILAAAA HAAANSSPFT IFYNPRASPS EFVIPLAKYN
0301: KALYTQVSLG MRFRMLFETE DSGVRRYMGT ITGIGDLDPV RWKNSHWRNL QVGWDESTAS ERRTRVSIWE IEPVATPFYI CPPPFFRPKL PKQPGMPDDE
0401: SEVDSAFKRA MPWLGDDFAL KDVQSQLFPG LSLVQWMAMQ QNPQMLPAGA PAVQAPYLNS SAMAMQDGMG TGNDDLMRRF NMQGQNIGLP NSQVGSKMDH
0501: PAMAQHQQQS HQLQQQQQVQ QSQQSSAVQQ QQAQLLQQNA IHLQQQQEHL QRQQSLPQQQ QEHLQRQQSQ PQQQLKTAAS MPSMEQHKLR EQQPQGGQAV
0601: SQAQMLSQIF QPSSSQLQQL GLPKSPTQRP GFPGLPTACS LQQPARGQAP QVQQAAEYQQ ALLQSQQQQL QQLSQPEMQL QLLQKIQQQN MLSQLNPQHQ
0701: SQLMQQLSQK NQEYLQQQIL QHQLSGSDAM VQFKQSHQTP SNNITGSLTP QQLARSHSAL AESEDPSSST APSANRLSPM NSLSRTHQGS RNLTDMTTSP
0801: HIDNLLQEIQ SKPDNRNKND TQSSKETIPV PNRYPVSDQL DASSATSFCL DESPREGFSF PPVCLDSNAQ VDPRDNFLIA ENVDSLMPDA LLSRGMGSGK
0901: DICNLPSGQR DHREVDNELS SAAFSSQSFG VPDMSFKPGC SGDIAVNDGG MPSQGLWNNQ TQRMRTFTKV QKRGSVGRSI DITRYTNYDE LRHDLACMFG
1001: IQGQLEDPYR MDWKLVYVDH ENDILLVGDD PWEEFVSCVK SIKILSSVEV QQMSLDGDLG GIPSQTQACS ASDDANAWRG S
0001: MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
0401: SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
0501: QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
0601: QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
0701: QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
0801: NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
0901: QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1001: TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1101: DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
0401: SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
0501: QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
0601: QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
0701: QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
0801: NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
0901: QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1001: TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1101: DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR
Arabidopsis Description
NPH4Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [Source:TAIR;Acc:AT5G20730]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.