Factsheet for Bra020125.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra001900.1-P
Bra002327.1-P
Bra011082.1-P
Bra012910.1-P
Bra014303.1-P
Bra015298.1-P
Bra018938.1-P
Bra018993.1-P
Bra020125.1-P
Bra021117.1-P
Bra027232.1-P
Bra029990.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra036048.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20730.1	Bra015298.1-P	AT1G04250.1	21734647
AT5G20730.1	Bra030560.1-P	AT1G04250.1	21734647
AT5G20730.1	Bra032520.1-P	AT1G04250.1	21734647
AT5G20730.1	Bra014303.1-P	AT1G51950.1	18505759
AT5G20730.1	Bra018938.1-P	AT1G51950.1	18505759
AT5G20730.1	Bra018993.1-P	AT1G52830.1	14729917
AT5G20730.1	Bra001598.1-P	AT3G15540.1	14729917
AT5G20730.1	Bra021117.1-P	AT3G15540.1	14729917
AT5G20730.1	Bra027232.1-P	AT3G15540.1	14729917
AT5G20730.1	Bra001598.1-P	AT3G15540.1	21734647
AT5G20730.1	Bra021117.1-P	AT3G15540.1	21734647
AT5G20730.1	Bra027232.1-P	AT3G15540.1	21734647
AT5G20730.1	Bra001900.1-P	AT3G23050.1	21734647
AT5G20730.1	Bra033886.1-P	AT3G23050.1	21734647
AT5G20730.1	Bra012910.1-P	AT3G50060.1	17675404
AT5G20730.1	Bra029990.1-P	AT3G50060.1	17675404
AT5G20730.1	Bra036048.1-P	AT3G50060.1	17675404
AT5G20730.1	Bra039732.1-P	AT4G14560.1	14729917
AT5G20730.1	Bra039732.1-P	AT4G14560.1	21734647
AT5G20730.1	Bra039732.1-P	AT4G14560.1	9342315
AT5G20730.1	Bra011082.1-P	AT4G29080.1	21734647
AT5G20730.1	Bra002327.1-P	AT5G20730.1	14729917
AT5G20730.1	Bra020125.1-P	AT5G20730.1	14729917

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45069	Canola	nucleus	95.73	94.61
AT5G20730.1	Thale cress	nucleus	90.18	85.15
Bra002327.1-P	Field mustard	nucleus	86.45	66.09
KRH12587	Soybean	nucleus	63.73	62.48
KRH37536	Soybean	nucleus	63.82	62.4
Bra016517.1-P	Field mustard	nucleus	56.73	61.78
Bra025720.1-P	Field mustard	nucleus	58.73	61.58
VIT_11s0016g00640.t01	Wine grape	nucleus	64.45	61.39
KRH19355	Soybean	nucleus	62.18	60.48
KRH02575	Soybean	nucleus	62.36	60.39
Bra025775.1-P	Field mustard	nucleus	25.36	59.36
GSMUA_Achr9P18170_001	Banana	nucleus	46.0	59.25
GSMUA_Achr3P10240_001	Banana	nucleus	33.18	58.87
Solyc07g042260.2.1	Tomato	nucleus	60.82	58.84
PGSC0003DMT400006151	Potato	nucleus	61.09	58.08
Os06t0196700-02	Rice	nucleus	48.18	50.24
KXG19536	Sorghum	nucleus	47.91	50.05
TraesCS7D01G161900.1	Wheat	nucleus	48.27	49.86
TraesCS7A01G160800.1	Wheat	nucleus	48.27	49.81
Zm00001d045026_P002	Maize	nucleus	47.45	49.57
TraesCS7B01G065800.2	Wheat	plastid	47.82	48.66
HORVU7Hr1G033820.5	Barley	nucleus	46.09	47.56
Bra004125.1-P	Field mustard	nucleus	31.91	45.0
Bra010776.1-P	Field mustard	nucleus	33.45	44.23
Bra016492.1-P	Field mustard	nucleus	32.09	42.22
Bra028110.1-P	Field mustard	nucleus	32.09	41.82
Bra012190.1-P	Field mustard	nucleus	32.27	40.95
Bra014419.1-P	Field mustard	nucleus	20.09	39.82
Bra004530.1-P	Field mustard	nucleus	20.09	37.84
Bra013748.1-P	Field mustard	nucleus	20.45	37.38
Bra019255.1-P	Field mustard	nucleus	20.91	36.92
Bra035427.1-P	Field mustard	nucleus	21.27	35.19
Bra034234.1-P	Field mustard	nucleus	16.55	33.64
Bra002479.1-P	Field mustard	nucleus	21.82	31.66
Bra010048.1-P	Field mustard	nucleus	24.36	31.49
Bra027944.1-P	Field mustard	nucleus	15.64	31.33
Bra018124.1-P	Field mustard	nucleus	15.18	30.09
Bra035910.1-P	Field mustard	nucleus	23.45	29.05
Bra017362.1-P	Field mustard	nucleus	13.55	27.59
Bra007632.1-P	Field mustard	nucleus	20.0	20.85

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01304	ProteinID:AFD01304.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra020125	EnsemblPlants:Bra020125.1	EnsemblPlants:Bra020125.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:H9B4D1	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979470	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF21	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002535792	SEG:seg	:	:

Description

AT1G19220 (E=2e-284) ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor

Coordinates

chrA02:-:5149234..5154043

Molecular Weight (calculated)

121243.0 Da

IEP (calculated)

6.832

GRAVY (calculated)

-0.612

Length

1100 amino acids

Sequence
(BLAST)

0001: MKAPSSNGVS PNPVEGDRRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLQ NVTLNADPET DEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: SNKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKSSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFAGQPGM PDDETDMESA LKRAMPWLDN
0401: GLEMKDSSSS IFPGLSLVQW MSMQQQNGQL PSSAAAAQSG FFPSMLPPAT GMHNNLGGTD DPSKLLSFQT PPGGISSANL QFNKPNPQAS MSQLPQPPTT
0501: LSQQQQLQQL LHSSLNHQQQ QSQPQQQQTL QQQHHQPLHQ QTQQLQQQQQ QLQSHPHPQP QSQSQPQQLQ PHQLQQFQLP QNQPYNSQQA AQQHQAQQAS
0601: MHHLQPPVVS VSMASSVIVP PSSSLNQNCQ QQQQQSTQLQ HTHRHLGAST SQSNVVETSK SSSSNPMSIP PHDTQFPRQL EQQQPPVLVN GPNQQHKAQQ
0701: THQQMFQQSL LEQPHLQFQL LQRLQQQQQQ FLMPGSSSLQ SQLLHQQLQQ PPPQMLVSRP QDKQNPLVGG GGVKAYSGIT DGGDAPSSST SPSTNNCQIS
0801: SSTFLNRTQS GPPTLMPDAA VDISGSLVQD LYSKSDMRLK HELAGPQKSK ASLTDHHHQL EASASGTSFL APTFGLDSDS RNSLLGGGAN VDNGFVPDTL
0901: LSRGYDSQKD LQNMLSNYGG VTNDIGTEMS TSAIRTQSFG IPNVPAISND VAVNDAGGVL GGGLWPTQTQ RMRTYTKVQK RGSVGRSIDV NRYRGYDELR
1001: HDLARMFGIE GQLEDPQTSD WKLVYVDHEN DILLVGDDPW EEFVNCVQSI KILSSAEVQQ MSLDGNFAGV PVTNQACSGG DSGNAWRGHY DDNSATSFNR

Best Arabidopsis Sequence Match ( AT5G20730.2 )
(BLAST)

0001: MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
0401: SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
0501: QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
0601: QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
0701: QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
0801: NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
0901: QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1001: TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1101: DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR

Arabidopsis Description

NPH4Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [Source:TAIR;Acc:AT5G20730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.