Factsheet for AT5G20730.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92437	Canola	nucleus	80.6	90.29
Bra020125.1-P	Field mustard	nucleus	85.15	90.18
CDY45069	Canola	nucleus	81.97	85.8
CDY16560	Canola	nucleus	68.84	76.97
Bra002327.1-P	Field mustard	nucleus	86.09	69.7
KRH12587	Soybean	nucleus	62.32	64.71
KRH37536	Soybean	nucleus	61.89	64.09
VIT_11s0016g00640.t01	Wine grape	nucleus	63.52	64.07
KRH19355	Soybean	nucleus	60.0	61.8
AT1G19220.1	Thale cress	nucleus	57.6	61.79
KRH02575	Soybean	nucleus	60.09	61.62
Solyc07g042260.2.1	Tomato	nucleus	59.74	61.21
PGSC0003DMT400006151	Potato	nucleus	60.17	60.59
GSMUA_Achr9P18170_001	Banana	nucleus	44.03	60.07
GSMUA_Achr3P10240_001	Banana	nucleus	31.42	59.03
Os06t0196700-02	Rice	nucleus	46.27	51.09
TraesCS7D01G161900.1	Wheat	nucleus	46.7	51.08
TraesCS7A01G160800.1	Wheat	nucleus	46.7	51.03
KXG19536	Sorghum	nucleus	45.67	50.52
Zm00001d045026_P002	Maize	nucleus	45.24	50.05
TraesCS7B01G065800.2	Wheat	plastid	46.27	49.86
HORVU7Hr1G033820.5	Barley	nucleus	44.81	48.97
AT5G37020.1	Thale cress	nucleus	31.42	45.13
AT1G30330.3	Thale cress	nucleus	35.45	44.17
AT1G19850.1	Thale cress	nucleus	31.16	40.24
AT3G61830.1	Thale cress	nucleus	18.88	36.54
AT4G23980.1	Thale cress	nucleus	19.83	36.21
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	18.97	35.53
AT1G59750.1	Thale cress	nucleus	20.26	35.49
AT1G34390.1	Thale cress	nucleus	17.25	33.61
AT1G34310.1	Thale cress	nucleus	17.0	33.39
AT1G35240.1	Thale cress	nucleus	16.82	33.11
AT1G35520.1	Thale cress	nucleus	16.74	32.88
AT1G34410.1	Thale cress	nucleus	17.08	32.84
AT1G35540.1	Thale cress	nucleus	17.0	32.73
AT1G34170.3	Thale cress	nucleus	15.11	32.23
AT5G62000.1	Thale cress	nucleus	23.0	31.2
AT5G60450.1	Thale cress	nucleus	20.94	30.96

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:832196	ProteinID:AAF71831.1
ProteinID:AED92884.1	ProteinID:AED92886.1	ArrayExpress:AT5G20730	EnsemblPlantsGene:AT5G20730	RefSeq:AT5G20730	TAIR:AT5G20730
RefSeq:AT5G20730-TAIR-G	EnsemblPlants:AT5G20730.1	TAIR:AT5G20730.1	InterPro:AUX/IAA_dom	Unigene:At.59645	InterPro:Auxin_resp
InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	Symbol:NPH4	RefSeq:NP_568400.2	RefSeq:NP_851046.1
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PO:PO:0000013	PO:PO:0000016
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009015	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF21	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI00000A0FF6	SEG:seg	:	:	:

Description

NPH4Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [Source:TAIR;Acc:AT5G20730]

Coordinates

chr5:-:7016470..7022113

Molecular Weight (calculated)

129080.0 Da

IEP (calculated)

6.854

GRAVY (calculated)

-0.688

Length

1165 amino acids

Sequence
(BLAST)

0001: MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR WAAPAEFVVP LAKYTKAMYA QVSLGMRFRM
0301: IFETEECGVR RYMGTVTGIS DLDPVRWKNS QWRNLQIGWD ESAAGDRPSR VSVWDIEPVL TPFYICPPPF FRPRFSGQPG MPDDETDMES ALKRAMPWLD
0401: NSLEMKDPSS TIFPGLSLVQ WMNMQQQNGQ LPSAAAQPGF FPSMLSPTAA LHNNLGGTDD PSKLLSFQTP HGGISSSNLQ FNKQNQQAPM SQLPQPPTTL
0501: SQQQQLQQLL HSSLNHQQQQ SQSQQQQQQQ QLLQQQQQLQ SQQHSNNNQS QSQQQQQLLQ QQQQQQLQQQ HQQPLQQQTQ QQQLRTQPLQ SHSHPQPQQL
0601: QQHKLQQLQV PQNQLYNGQQ AAQQHQSQQA STHHLQPQLV SGSMASSVIT PPSSSLNQSF QQQQQQSKQL QQAHHHLGAS TSQSSVIETS KSSSNLMSAP
0701: PQETQFSRQV EQQQPPGLNG QNQQTLLQQK AHQAQAQQIF QQSLLEQPHI QFQLLQRLQQ QQQQQFLSPQ SQLPHHQLQS QQLQQLPTLS QGHQFPSSCT
0801: NNGLSTLQPP QMLVSRPQEK QNPPVGGGVK AYSGITDGGD APSSSTSPST NNCQISSSGF LNRSQSGPAI LIPDAAIDMS GNLVQDLYSK SDMRLKQELV
0901: GQQKSKASLT DHQLEASASG TSYGLDGGEN NRQQNFLAPT FGLDGDSRNS LLGGANVDNG FVPDTLLSRG YDSQKDLQNM LSNYGGVTND IGTEMSTSAV
1001: RTQSFGVPNV PAISNDLAVN DAGVLGGGLW PAQTQRMRTY TKVQKRGSVG RSIDVNRYRG YDELRHDLAR MFGIEGQLED PQTSDWKLVY VDHENDILLV
1101: GDDPWEEFVN CVQSIKILSS AEVQQMSLDG NFAGVPVTNQ ACSGGDSGNA WRGHYDDNSA TSFNR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.