Factsheet for AT1G59750.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035427.1-P	Field mustard	nucleus	94.29	94.29
CDY65065	Canola	nucleus	93.68	94.25
CDY33603	Canola	nucleus	93.53	94.1
CDY27291	Canola	nucleus	86.32	92.73
KRH26266	Soybean	nucleus	71.13	71.13
KRH06026	Soybean	nucleus	70.53	70.53
VIT_12s0035g01800.t01	Wine grape	nucleus	71.28	69.91
Solyc01g103050.2.1	Tomato	nucleus	67.52	68.65
KRH51289	Soybean	nucleus	69.47	68.55
PGSC0003DMT400053380	Potato	nucleus	67.22	68.35
GSMUA_Achr9P08310_001	Banana	vacuole	45.26	61.81
GSMUA_Achr10P...	Banana	nucleus	62.26	61.42
GSMUA_Achr6P07390_001	Banana	nucleus	60.0	60.92
Os04t0442000-01	Rice	nucleus	61.35	60.62
Os02t0557200-01	Rice	nucleus	61.35	60.18
Zm00001d050781_P001	Maize	nucleus	56.84	60.0
TraesCS2D01G307600.1	Wheat	nucleus	58.8	59.79
EES06968	Sorghum	nucleus	60.3	59.67
EES10850	Sorghum	nucleus	59.25	59.61
TraesCS2B01G326400.1	Wheat	nucleus	58.5	59.48
GSMUA_Achr6P12780_001	Banana	nucleus	62.11	59.34
TraesCS2A01G309300.1	Wheat	nucleus	58.35	59.33
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	61.5	58.68
HORVU2Hr1G076920.3	Barley	nucleus	58.2	57.93
Zm00001d003601_P006	Maize	nucleus	58.35	56.89
Zm00001d016838_P001	Maize	nucleus	60.0	56.76
AT3G61830.1	Thale cress	nucleus	46.02	50.83
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	45.56	48.71
AT4G23980.1	Thale cress	nucleus	45.86	47.81
AT1G34390.1	Thale cress	nucleus	36.24	40.3
AT1G35240.1	Thale cress	nucleus	35.64	40.03
AT1G34410.1	Thale cress	nucleus	36.39	39.93
AT1G35540.1	Thale cress	nucleus	36.09	39.67
AT1G34310.1	Thale cress	nucleus	35.19	39.46
AT5G62000.1	Thale cress	nucleus	50.83	39.35
AT1G34170.3	Thale cress	nucleus	32.03	39.01
AT1G35520.1	Thale cress	nucleus	34.74	38.95
AT5G60450.1	Thale cress	nucleus	37.29	31.47
AT5G37020.1	Thale cress	nucleus	36.24	29.72
AT1G19850.1	Thale cress	nucleus	35.19	25.94
AT1G30330.3	Thale cress	nucleus	35.79	25.45
AT1G19220.1	Thale cress	nucleus	36.99	22.65
AT5G20730.1	Thale cress	nucleus	35.49	20.26

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	PDB:4LDV	PDB:4LDW
PDB:4LDX	PDB:4LDY	EntrezGene:842268	ProteinID:AAD39318.1	ProteinID:AEE33612.1	ProteinID:AEE33613.1
ProteinID:AEE33614.1	EMBL:AK317214	Symbol:ARF1	ArrayExpress:AT1G59750	EnsemblPlantsGene:AT1G59750	RefSeq:AT1G59750
TAIR:AT1G59750	RefSeq:AT1G59750-TAIR-G	EnsemblPlants:AT1G59750.1	TAIR:AT1G59750.1	InterPro:AUX/IAA_dom	EMBL:AY133723
Unigene:At.74832	InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:B9DGM9	EMBL:BT002748	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733	GO:GO:0009734	GO:GO:0009987
GO:GO:0010150	GO:GO:0042802	GO:GO:0045892	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
RefSeq:NP_001031208.1	RefSeq:NP_176184.1	RefSeq:NP_849830.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF24	UniProt:Q8L7G0	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	EMBL:U83245	UniParc:UPI000000BD9F	SEG:seg	:

Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]

Coordinates

chr1:+:21979339..21984429

Molecular Weight (calculated)

73671.4 Da

IEP (calculated)

6.153

GRAVY (calculated)

-0.569

Length

665 amino acids

Sequence
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPV TPDGVWKSPA
401: DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPTNAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN
501: EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ GSAVGRAIDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD
601: MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQLKADAEE NGNTEGRSSS MAGSR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.